| Abstract Detail
Functional Genetics/Genomics Younkin, Gordon [1], Alani, Martin [1], Mirzaei, Mahdieh [2], Jander, Georg [2]. Comparative transcriptomics of 48 Erysimum species guides discovery of cardiac glycoside biosynthetic genes. Erysimum is a diverse crucifer genus consisting of several hundred species distributed across the temperate northern hemisphere. Like most members of the Brassicaceae, Erysimum produces glucosinolates. However, its recent and rapid radiation has been partially attributed to its 'escape from herbivory' via the evolution of another class of toxic compounds called cardiac glycosides. Cardiac glycosides have been used to treat heart conditions for hundreds of years and remain on the World Health Organization's list of essential medicines. However, the biosynthetic pathway remains unknown. E. cheiranthoides' close relationship with Arabidopsis, relatively small diploid genome, short generation time, and simple floral dip transformation make it a good model for studying the evolution, synthesis, and function of these important defensive compounds. I will explore my use of genus-wide and tissue-specific metabolomic and transcriptomic datasets to identify candidate genes for cardiac glycoside biosynthesis and my preliminary efforts to test candidate gene function using Cas9-mediated gene editing.
Related Links: Erysimum genome paper Erysimum genome website
1 - Cornell University, 533 Tower Rd., Ithaca, NY, 14853, USA 2 - Boyce Thompson Institute, 533 Tower Rd., Ithaca, NY, 14853, USA
Keywords: Erysimum cardenolides cardiac glycosides Brassicaceae phytochemistry specialized metabolism gene coexpression networks CRISPR/Cas9 glucosinolates defensive metabolites medicinal compounds comparative transcriptomics.
Presentation Type: Oral Paper Number: FGG1002 Abstract ID:203 Candidate for Awards:Phytochemical Best Oral Presentation Award |