| ID | Title | Section/Topic | Authors | Keywords |
|---|
| 564 | 3D floral morphological model and color variances in Pedicularis | Biodiversity Informatics & Herbarium Digitization | Yang, Yue; Jin, JianJun; Eaton, Deren. | 3D model
Floral morphology
Pedicularis |
| 394 | A general theory of phenological timing reveals counterintuitive interpretations of historical patterns of phenological change | Biodiversity Informatics & Herbarium Digitization | Hearn, David. | Bayesian inference
MCMC
phenology
phenophase
phenological shift
biological timing
Herbarium Digitization
spring ephemeral |
| 378 | Analyzing spatial bias in herbarium data in Oklahoma and Texas | Biodiversity Informatics & Herbarium Digitization | Hubbard, Sierra; Fishbein, Mark. | Herbarium Digitization
Biodiversity |
| 697 | Applying the Digital Extended Specimen: building collections and integrating data | Biodiversity Informatics & Herbarium Digitization | Hansen, Sara; Hackett, Rachel; Cahill, Blake; Cuthrell, David; Monfils, Michael; Belitz, Michael; Goebel, Ryan; Rowe, Logan; Monfils, Anna. | |
| 878 | Assessment of sequencing bias in genomic-level projects using herbarium specimens of five invasive species | Biodiversity Informatics & Herbarium Digitization | Motley, M'Kayla; Hofford, Nate; Barrett, Craig; Beck, James; Khanal, Deva Raj; Kooyers, Nicholas; Latvis, Maribeth; Ramachandran, Dhanushya; Sigel, Erin; Sutherland, Brittany; McKain, Michael. | herbarium genomics
sequencing bias
genotyping |
| 702 | Comparing herbivory in invasive and native honeysuckles using manual and automated methods | Biodiversity Informatics & Herbarium Digitization | Cardenas, Santiago D; Clement, Wendy. | herbarium specimen
Lonicera
herbivory
invasive species
Machine Learning |
| 909 | Comparing the Quality of Various Open Sourced Datasets Utilizing Known Patterns of Edaphic Endemism and GIS Analyses | Biodiversity Informatics & Herbarium Digitization | Andreski, Christina; Jolles, Diana. | Edaphic Endemism
Substrate specialist
GIS analyses
herbarium specimen
spatial data
open source |
| 248 | Demonstration of the use of computational linguistics and machine learning to identify phenological anomalies described in the world’s biodiversity specimen records | Biodiversity Informatics & Herbarium Digitization | Mast, Austin; Tian, Shubo; He, Zhe; Krimmel, Erica; Pichardo-Marcano, Fritz; Buckley, Mikayla; Gomez, Sophia; Hennessey, Ashley; Horn, Allyson; Howell, Olivia. | phenology
Herbarium
Computational linguistics
Machine Learning
Anomaly detection
Global change
conservation
Biodiversity Informatics |
| 1018 | Digitization of Pakistani Herbaria and Botanic Gardens: An Approach for Data Mobilization | Biodiversity Informatics & Herbarium Digitization | Yaseen, Ghulam; Ahmad, Mushtaq; Zafar, Muhammad; Sultana, Shazia. | Biodiversity
digitization
herbaria
Pakistan |
| 285 | Digitization of the Lagos University Herbarium - A complimentary conservation approach | Biodiversity Informatics & Herbarium Digitization | Onuminya, Temitope; Ogundipe, Oluwatoyin; Igbari, Dolapo; Kemabonta, Kehinde. | Biodiversity
Herbarium Digitization
LUH
Bioconservation
GBIF-BID |
| 985 | DNA Barcoding the Plants of Nevada State College | Biodiversity Informatics & Herbarium Digitization | Dertien, Joseph; Yokomizo, Alexandra; Hunnicutt, Shawna; Hall, Alyssa. | DNA barcoding
Biodiversity |
| 148 | Easing the Transfer of Knowledge: A Herbarium Processing Toolkit | Biodiversity Informatics & Herbarium Digitization | Ackerfield, Jennifer; Yousse, Margo. | Collections management
Specimen processing
Herbarium |
| 147 | EcoFloras provide valuable insight into the use of iNaturalist data | Biodiversity Informatics & Herbarium Digitization | Ackerfield, Jennifer; Lichtenberger, Taran; Davis, Jeny; Paradiso, Lydia. | iNaturalist
community engagement
Citizen Science
Botanic gardens |
| 877 | Embrapa Reference Collections for Genetic Resources | Biodiversity Informatics & Herbarium Digitization | Heiden, Gustavo; Mazzocato, Ana Cristina; Lopes, Andrielle Camara Amaral; Carpanezii, Antonio Aparecido; Pires, Carmen Silvia Soares; Urbanetz, Catia; Gomes, Cesar Bauer; Fontes, Eliane Maria Gouveia; Fidelis, Elisangela Gomes; Souza, Fernanda Ilkiu Borges de; Souza, Helena Joseane Raiol; Silva, Lorena Mara Alexandre e; Kiil, Lucia Helena Piedade; Maués, Marcia Motta; Benito, Norton Polo; Carneiro, Regina Maria Dechechi; Xavier Junior, Sebatião Ribeiro; Noronha, Sérgio Eustáquio de; Rodrigues, Silvane Tavares; Cavalcanti, Taciana. | Herbarium
Genebank
Atlantic Rainforest
Amazon
Caatinga
Cerrado
Pampas
Pantanal |
| 431 | Improving Ecological Niche Modeling: Comparing Methods of Spatial and Climatic Rarefaction on Geographically Restricted and Widespread Species of Asclepias (Apocynaceae) | Biodiversity Informatics & Herbarium Digitization | Kunkel, David; Fishbein, Mark. | Ecological niche model
rarefaction
data filtering
Asclepias
spatial data |
| 917 | Making the collection of field data as easy as (Survey) 1-2-3: digital field notes and specimen labels with ArcGIS online | Biodiversity Informatics & Herbarium Digitization | Krosnick, Shawn. | Survey123
Field Botany
field studies
Herbarium |
| 239 | Modular Machine Learning Methods for End-to-End Automated Phenotypic Trait Extraction from Digitized Herbarium Vouchers | Biodiversity Informatics & Herbarium Digitization | Weaver, William; Laport, Robert; Jaime-Rivera, Jorge; Ng, Julienne; Smith, Stephen. | Herbarium Digitization
Machine Learning
plant traits
phenology
convolutional neural networks
Specimen processing
morphology
software |
| 900 | New Online Resources for the Desert Legume Program (DELEP) | Biodiversity Informatics & Herbarium Digitization | Charboneau, Joseph; Johnson, Matthew B.; McMahon, Michelle. | Fabaceae
Leguminosae
seed banking
Wild relatives
web content |
| 452 | New professional development offerings from iDigBio's Digitization Academy | Biodiversity Informatics & Herbarium Digitization | Mast, Austin; Cohen, Lauren; Krimmel, Erica. | iDigBio
Biodiversity Informatics
Herbarium Digitization
Professional Development
Imaging
Georeferencing
Photogrammetry
Databasing
Citizen Science |
| 306 | Parasitic flowering plant collections embody the extended specimen | Biodiversity Informatics & Herbarium Digitization | Teixeira-Costa, Luiza; Heberling, Mason; Wilson, Carol; Davis, Charles. | |
| 1014 | Predicting future Arctostaphylos species distribution using machine learning | Biodiversity Informatics & Herbarium Digitization | Kao, Jenni; Huang, Yi; Morrison, Glen R; Litt, Amy. | manzanita
climate change
California Floristic Province
Machine Learning
conservation |
| 1013 | Quantifying Error in Occurrence Data: A Framework for the Use of Citizen Science and Digitized Herbarium Data in Plant Families of the Southeastern United States | Biodiversity Informatics & Herbarium Digitization | White, Elizabeth. | |
| 373 | Resolving species names rapidly and accurately with the “taxastand” R package | Biodiversity Informatics & Herbarium Digitization | Nitta, Joel; Iwasaki, Wataru. | R
Biodiversity
Taxonomy
software |
| 384 | Sampling biases in herbarium data inflate signatures of climate change: causes and solutions | Biodiversity Informatics & Herbarium Digitization | Hearn, David. | sampling bias
climate change
Herbarium Digitization
detrending
order statistics
phenology
spring ephemeral |
| 1023 | Spatial phylogenetic diversity and endemism in the floristic North American Coastal Plain: a Global Biodiversity Hotspot | Biodiversity Informatics & Herbarium Digitization | Kinser, Taliesin; Allen, Julie; Barve, Narayani; Whitehurst, Lauren; White, Elizabeth; Guralnick, Robert; Soltis, Pamela; Soltis, Douglas. | phylogenetics
Biodiversity
Southeastern Flora
endemism |
| 251 | The Herbarium of Economic Botany of Ecuador (QUSF) | Biodiversity Informatics & Herbarium Digitization | Valdebenito, Hugo. | Ecuador
flora
Economic Botany |
| 385 | The Leo A. Galloway Herbarium at Missouri Western State University- showcasing floralspecimens from North West Missouri and adjacent areas | Biodiversity Informatics & Herbarium Digitization | Par, Esther; Roy, T. | |
| 852 | The People's Herbarium: Digitizing the USDA's Preserved Plant Collection | Biodiversity Informatics & Herbarium Digitization | Svoboda, Harlan. | Herbarium
Collections
digitization
specimens |
| 181 | Toward a completely open-source 3D printable laboratory: The Biological Affordable Imaging with Raspberry Pi (BAIR) System | Biodiversity Informatics & Herbarium Digitization | McNair, Mason C; Cocioba, Sebastian; Pietrzyk, Peter. | 3d printed
low cost
open source
Citizen Science
wet lab
affordable |
| 501 | TRANSFER LEARNING FOR AUTOMATED PHENOPHASE PREDICTION OF PARASITIC STRIGA | Biodiversity Informatics & Herbarium Digitization | McCormick, Shelby; Bellis, Emily. | Herbarium Digitization
Machine Learning |
| 734 | Using deep learning image clustering to aid species delimitation within the Vitis arizonica complex | Biodiversity Informatics & Herbarium Digitization | Fochesatto, Stefano; Shavlik, Matthew; Ickert-Bond, Steffi; Hodel, Richard; Wen, Jun. | deep learning
Machine Learning
Vitis arizonica complex
species delimitation
herbarium specimens |
| 1058 | Canceled Using digitized herbarium specimens to identify evolutionarily diverse hotspots in Florida | Biodiversity Informatics & Herbarium Digitization | Whitehurst, Lauren; Kinser, Taliesin; Allen, Julie; Barve, Narayani; White, Elizabeth; Guralnick, Robert; Soltis, Pamela; Soltis, Douglas. | phylogenetics
conservation
digitization
Herbarium
systematics |
