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| Session | Date/Time | Location | Title | Type | Authors | Keywords |
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Monday, July 25th |
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| BI&HD I001 | July 25th 8:00 am | Tubughnenq' 3/Dena'ina Center | Comparing herbivory in invasive and native honeysuckles using manual and automated methods | Oral Paper | Cardenas, Santiago D; Clement, Wendy. | herbarium specimen
Lonicera
herbivory
invasive species
Machine Learning |
| BI&HD I002 | July 25th 8:15 am | Tubughnenq' 3/Dena'ina Center | Using deep learning image clustering to aid species delimitation within the Vitis arizonica complex | Oral Paper | Fochesatto, Stefano; Shavlik, Matthew; Ickert-Bond, Steffi; Hodel, Richard; Wen, Jun. | deep learning
Machine Learning
Vitis arizonica complex
species delimitation
herbarium specimens |
| BI&HD I003 | July 25th 8:30 am | Tubughnenq' 3/Dena'ina Center | Assessment of sequencing bias in genomic-level projects using herbarium specimens of five invasive species | Oral Paper | Motley, M'Kayla; Hofford, Nate; Barrett, Craig; Beck, James; Khanal, Deva Raj; Kooyers, Nicholas; Latvis, Maribeth; Ramachandran, Dhanushya; Sigel, Erin; Sutherland, Brittany; McKain, Michael. | herbarium genomics
sequencing bias
genotyping |
| BI&HD I004 | July 25th 8:45 am | Tubughnenq' 3/Dena'ina Center | Comparing the Quality of Various Open Sourced Datasets Utilizing Known Patterns of Edaphic Endemism and GIS Analyses | Oral Paper | Andreski, Christina; Jolles, Diana. | Edaphic Endemism
Substrate specialist
GIS analyses
herbarium specimen
spatial data
open source |
| BI&HD I005 | July 25th 9:00 am | Tubughnenq' 3/Dena'ina Center | Making the collection of field data as easy as (Survey) 1-2-3: digital field notes and specimen labels with ArcGIS online | Oral Paper | Krosnick, Shawn. | Survey123
Field Botany
field studies
Herbarium |
| BI&HD I006 | July 25th 9:15 am | Tubughnenq' 3/Dena'ina Center | Quantifying Error in Occurrence Data: A Framework for the Use of Citizen Science and Digitized Herbarium Data in Plant Families of the Southeastern United States | Oral Paper | White, Elizabeth. | |
| BI&HD I007 | July 25th 9:30 am | Tubughnenq' 3/Dena'ina Center | Predicting future Arctostaphylos species distribution using machine learning | Oral Paper | Kao, Jenni; Huang, Yi; Morrison, Glen R; Litt, Amy. | manzanita
climate change
California Floristic Province
Machine Learning
conservation |
| July 25th 9:45 am | Tubughnenq' 3/Dena'ina Center | Break | | | |
| BI&HD I009 | July 25th 10:15 am | Tubughnenq' 3/Dena'ina Center | Spatial phylogenetic diversity and endemism in the floristic North American Coastal Plain: a Global Biodiversity Hotspot | Oral Paper | Kinser, Taliesin; Allen, Julie; Barve, Narayani; Whitehurst, Lauren; White, Elizabeth; Guralnick, Robert; Soltis, Pamela; Soltis, Douglas. | phylogenetics
Biodiversity
Southeastern Flora
endemism |
| BI&HD I010 | July 25th 10:30 am | Tubughnenq' 3/Dena'ina Center | Modular Machine Learning Methods for End-to-End Automated Phenotypic Trait Extraction from Digitized Herbarium Vouchers | Oral Paper | Weaver, William; Laport, Robert; Jaime-Rivera, Jorge; Ng, Julienne; Smith, Stephen. | Herbarium Digitization
Machine Learning
plant traits
phenology
convolutional neural networks
Specimen processing
morphology
software |
| BI&HD I011 | July 25th 10:45 am | Tubughnenq' 3/Dena'ina Center | Resolving species names rapidly and accurately with the “taxastand” R package | Oral Paper | Nitta, Joel; Iwasaki, Wataru. | R
Biodiversity
Taxonomy
software |
| BI&HD I012 | July 25th 11:00 am | Tubughnenq' 3/Dena'ina Center | Applying the Digital Extended Specimen: building collections and integrating data | Oral Paper | Hansen, Sara; Hackett, Rachel; Cahill, Blake; Cuthrell, David; Monfils, Michael; Belitz, Michael; Goebel, Ryan; Rowe, Logan; Monfils, Anna. | |
| BI&HD I013 | July 25th 11:15 am | Tubughnenq' 3/Dena'ina Center | Embrapa Reference Collections for Genetic Resources | Oral Paper | Heiden, Gustavo; Mazzocato, Ana Cristina; Lopes, Andrielle Camara Amaral; Carpanezii, Antonio Aparecido; Pires, Carmen Silvia Soares; Urbanetz, Catia; Gomes, Cesar Bauer; Fontes, Eliane Maria Gouveia; Fidelis, Elisangela Gomes; Souza, Fernanda Ilkiu Borges de; Souza, Helena Joseane Raiol; Silva, Lorena Mara Alexandre e; Kiil, Lucia Helena Piedade; Maués, Marcia Motta; Benito, Norton Polo; Carneiro, Regina Maria Dechechi; Xavier Junior, Sebatião Ribeiro; Noronha, Sérgio Eustáquio de; Rodrigues, Silvane Tavares; Cavalcanti, Taciana. | Herbarium
Genebank
Atlantic Rainforest
Amazon
Caatinga
Cerrado
Pampas
Pantanal |
| BI&HD I014 | July 25th 11:30 am | Tubughnenq' 3/Dena'ina Center | Digitization of Pakistani Herbaria and Botanic Gardens: An Approach for Data Mobilization | Oral Paper | Yaseen, Ghulam; Ahmad, Mushtaq; Zafar, Muhammad; Sultana, Shazia. | Biodiversity
digitization
herbaria
Pakistan |
| BI&HD I015 | July 25th 11:45 am | Tubughnenq' 3/Dena'ina Center | Canceled Using digitized herbarium specimens to identify evolutionarily diverse hotspots in Florida | Oral Paper | Whitehurst, Lauren; Kinser, Taliesin; Allen, Julie; Barve, Narayani; White, Elizabeth; Guralnick, Robert; Soltis, Pamela; Soltis, Douglas. | phylogenetics
conservation
digitization
Herbarium
systematics |
|
| PBI001 | July 25th 5:30 pm | Idlughet (Eklutna) Exhibit Hall/Dena'ina Center | Easing the Transfer of Knowledge: A Herbarium Processing Toolkit | Poster: Biodiversity Informatics & Herbarium Digitization | Ackerfield, Jennifer; Yousse, Margo. | Collections management
Specimen processing
Herbarium |
| PBI002 | July 25th 5:30 pm | Idlughet (Eklutna) Exhibit Hall/Dena'ina Center | Toward a completely open-source 3D printable laboratory: The Biological Affordable Imaging with Raspberry Pi (BAIR) System | Poster: Biodiversity Informatics & Herbarium Digitization | McNair, Mason C; Cocioba, Sebastian; Pietrzyk, Peter. | 3d printed
low cost
open source
Citizen Science
wet lab
affordable |
| PBI003 | July 25th 5:30 pm | Idlughet (Eklutna) Exhibit Hall/Dena'ina Center | Digitization of the Lagos University Herbarium - A complimentary conservation approach | Poster: Biodiversity Informatics & Herbarium Digitization | Onuminya, Temitope; Ogundipe, Oluwatoyin; Igbari, Dolapo; Kemabonta, Kehinde. | Biodiversity
Herbarium Digitization
LUH
Bioconservation
GBIF-BID |
| PBI004 | July 25th 5:30 pm | Idlughet (Eklutna) Exhibit Hall/Dena'ina Center | The Leo A. Galloway Herbarium at Missouri Western State University- showcasing floralspecimens from North West Missouri and adjacent areas | Poster: Biodiversity Informatics & Herbarium Digitization | Par, Esther; Roy, T. | |
| PBI005 | July 25th 5:30 pm | Idlughet (Eklutna) Exhibit Hall/Dena'ina Center | Improving Ecological Niche Modeling: Comparing Methods of Spatial and Climatic Rarefaction on Geographically Restricted and Widespread Species of Asclepias (Apocynaceae) | Poster: Biodiversity Informatics & Herbarium Digitization | Kunkel, David; Fishbein, Mark. | Ecological niche model
rarefaction
data filtering
Asclepias
spatial data |
| PBI006 | July 25th 5:30 pm | Idlughet (Eklutna) Exhibit Hall/Dena'ina Center | New professional development offerings from iDigBio's Digitization Academy | Poster: Biodiversity Informatics & Herbarium Digitization | Mast, Austin; Cohen, Lauren; Krimmel, Erica. | iDigBio
Biodiversity Informatics
Herbarium Digitization
Professional Development
Imaging
Georeferencing
Photogrammetry
Databasing
Citizen Science |
| PBI007 | July 25th 5:30 pm | Idlughet (Eklutna) Exhibit Hall/Dena'ina Center | TRANSFER LEARNING FOR AUTOMATED PHENOPHASE PREDICTION OF PARASITIC STRIGA | Poster: Biodiversity Informatics & Herbarium Digitization | McCormick, Shelby; Bellis, Emily. | Herbarium Digitization
Machine Learning |
| PBI008 | July 25th 5:30 pm | Idlughet (Eklutna) Exhibit Hall/Dena'ina Center | 3D floral morphological model and color variances in Pedicularis | Poster: Biodiversity Informatics & Herbarium Digitization | Yang, Yue; Jin, JianJun; Eaton, Deren. | 3D model
Floral morphology
Pedicularis |
| PBI009 | July 25th 5:30 pm | Idlughet (Eklutna) Exhibit Hall/Dena'ina Center | The People's Herbarium: Digitizing the USDA's Preserved Plant Collection | Poster: Biodiversity Informatics & Herbarium Digitization | Svoboda, Harlan. | Herbarium
Collections
digitization
specimens |
| PBI010 | July 25th 5:30 pm | Idlughet (Eklutna) Exhibit Hall/Dena'ina Center | New Online Resources for the Desert Legume Program (DELEP) | Poster: Biodiversity Informatics & Herbarium Digitization | Charboneau, Joseph; Johnson, Matthew B.; McMahon, Michelle. | Fabaceae
Leguminosae
seed banking
Wild relatives
web content |
| PBI011 | July 25th 5:30 pm | Idlughet (Eklutna) Exhibit Hall/Dena'ina Center | DNA Barcoding the Plants of Nevada State College | Poster: Biodiversity Informatics & Herbarium Digitization | Dertien, Joseph; Yokomizo, Alexandra; Hunnicutt, Shawna; Hall, Alyssa. | DNA barcoding
Biodiversity |
Tuesday, July 26th |
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|
| BI&HD II001 | July 26th 10:15 am | Kahtnu 1/Dena'ina Center | EcoFloras provide valuable insight into the use of iNaturalist data | Oral Paper | Ackerfield, Jennifer; Lichtenberger, Taran; Davis, Jeny; Paradiso, Lydia. | iNaturalist
community engagement
Citizen Science
Botanic gardens |
| BI&HD II002 | July 26th 10:30 am | Kahtnu 1/Dena'ina Center | Demonstration of the use of computational linguistics and machine learning to identify phenological anomalies described in the world’s biodiversity specimen records | Oral Paper | Mast, Austin; Tian, Shubo; He, Zhe; Krimmel, Erica; Pichardo-Marcano, Fritz; Buckley, Mikayla; Gomez, Sophia; Hennessey, Ashley; Horn, Allyson; Howell, Olivia. | phenology
Herbarium
Computational linguistics
Machine Learning
Anomaly detection
Global change
conservation
Biodiversity Informatics |
| BI&HD II003 | July 26th 10:45 am | Kahtnu 1/Dena'ina Center | The Herbarium of Economic Botany of Ecuador (QUSF) | Oral Paper | Valdebenito, Hugo. | Ecuador
flora
Economic Botany |
| BI&HD II004 | July 26th 11:00 am | Kahtnu 1/Dena'ina Center | Parasitic flowering plant collections embody the extended specimen | Oral Paper | Teixeira-Costa, Luiza; Heberling, Mason; Wilson, Carol; Davis, Charles. | |
| BI&HD II005 | July 26th 11:15 am | Kahtnu 1/Dena'ina Center | Analyzing spatial bias in herbarium data in Oklahoma and Texas | Oral Paper | Hubbard, Sierra; Fishbein, Mark. | Herbarium Digitization
Biodiversity |
| BI&HD II006 | July 26th 11:30 am | Kahtnu 1/Dena'ina Center | Sampling biases in herbarium data inflate signatures of climate change: causes and solutions | Oral Paper | Hearn, David. | sampling bias
climate change
Herbarium Digitization
detrending
order statistics
phenology
spring ephemeral |
| BI&HD II007 | July 26th 11:45 am | Kahtnu 1/Dena'ina Center | A general theory of phenological timing reveals counterintuitive interpretations of historical patterns of phenological change | Oral Paper | Hearn, David. | Bayesian inference
MCMC
phenology
phenophase
phenological shift
biological timing
Herbarium Digitization
spring ephemeral |
