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| Session | Date/Time | Location | Title | Type | Authors | Keywords |
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Monday, July 25th |
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| CGT1001 | July 25th 8:15 am | Birch/Hilton | Impacts of allopolyploidy on gene expression in Nicotiana section Repandae | Oral Paper | Ostovar, Talieh; Landis, Jacob; McCarthy, Elizabeth; Stajich, Jason; Waters, Elizabeth; Litt, Amy. | Nicotiana
allopolyploidy
comparative transcriptomics
hybrids |
| CGT1002 | July 25th 8:30 am | Birch/Hilton | Comparative transcriptomics provides insights into the genetic mechanisms regulating functional floral traits across Calochortus (Liliaceae) | Oral Paper | Hernandez, Adriana; Landis, Jacob; Tribble, Carrie; Eifler, Evan; Givnish, Thomas; Strickler, Susan; Specht, Chelsea. | RNA-Seq
Floral traits
trichomes
comparative transcriptomics
gene expression |
| CGT1003 | July 25th 8:45 am | Birch/Hilton | Transcriptomics of seasonal leaf senescence in a deciduous conifer (Larix laricina) | Oral Paper | Amee, Maurice; Cobo, Irene; Scott, Alison; Maher, Olivia; Wegrzyn, Jill. | comparative transcriptomics
seasonal senescence
RNA-Seq
conifer
differential gene expression |
| CGT1004 | July 25th 9:00 am | Birch/Hilton | Grow and then Show: understanding inducible phenotypes in solanum lycopersicum through transcriptomic analysis | Oral Paper | Quinchiguango Archuleta, Inti. | |
| CGT1005 | July 25th 9:15 am | Birch/Hilton | Multi-omic investigation of stress responses in Sea beet (Beta vulgaris ssp. maritima, Amaranthaceae) and preliminary metabolomics data in Ice Plant (Mesembryanthemum crystallinum, Aizoaceae) | Oral Paper | Radford, Zachary; Crum, Alexandra; Fredericksen, Brett; Schaut, Madelyn; Maeda, Hiroshi; Yang, Ya. | Co-expression network
Chenopodiaceae
Caryophyllales
time course
hyperspectral imaging
metabolite profiling
HPLC
transcriptome
quantum yield
stress experiments
high light
methyl jasmonate
salt stress
halophyte
betalain |
| CGT1006 | July 25th 9:30 am | Birch/Hilton | A drought GxE experiment reveals patterns of differential expression and drought tolerance genes in Artemisia tridentata (big sagebrush; Asteraceae) | Oral Paper | Melton, Anthony; Navock, Kara; Ellestad, Paige; Martinez, Peggy; Morales, Walker; Milliken, Erin; Serpe, Marcelo; Novak, Stephen; Buerki, Sven. | sagebrush
gene expression
drought |
|
| CGT2001 | July 25th 10:15 am | Birch/Hilton | Ancient yet Dynamic: The Evolution of a Fern Genome | Oral Paper | Marchant, Daniel Blaine; Soltis, Douglas; Soltis, Pamela; Leebens-Mack, Jim; Chen, Zhonghua. | fern
polyploidy
Horizontal Gene Transfer
genomics
Plant Evolution |
| CGT2002 | July 25th 10:30 am | Birch/Hilton | Exploring the structural variation and genome inheritance patterns using three generation red oak pedigree | Oral Paper | Kapoor, Beant; Jenkins, Jerry; Schmutz, Jeremy; Zhebentyayeva, Tetyana; Kulheim, Carsten; Lasky, Jesse; Leites, Laura; Schlarbaum, Scott; Carlson, John E.; Staton, Margaret; Coggeshall, Mark; Romero-Severson, Jeanne; Islam-Faridi, Nurul. | Northern red oak
Reference genome
Structural variation
Haplotype blocks
Recombination breakpoints |
| CGT2003 | July 25th 10:45 am | Birch/Hilton | Tracking a Cryptic Invader of the Vancouver Wetland with Genetics and Morphology< | Oral Paper | Buckholtz, Gracy. | Typha
Estuary
Microsatellite
Invasive
Cattail
Vancouver |
| CGT2004 | July 25th 11:00 am | Birch/Hilton | Hijacking a metagenomic strategy for rapid comparative subgenomics for polyploids and their progenitors | Oral Paper | Reynolds, Gillian; Mumey, Brendan; Strnadova-Neeley, Veronika; Lachowiec, Jennifer. | genomics
polyploidy
bioinformatics |
|
| CGT3001 | July 25th 1:30 pm | Birch/Hilton | Balancing read length and sequencing depth: optimizing Nanopore long-read sequencing for monocots with an emphasis on Liliales | Oral Paper | De La Cerda, Gisel; Landis, Jacob; Hernandez, Adriana; Tribble, Carrie; Eifler, Evan; Li, Fay-Wei; Zhang, Jing; Karimi, Nisa; Chan, Patricia; Givnish, Thomas; Strickler, Susan; Specht, Chelsea. | Nanopore
genome sequencing
Calochortus
monocot |
| CGT3002 | July 25th 1:45 pm | Birch/Hilton | Utilizing the long and the short: comparison of different genome assembly programs for a 5.5 GB Liliales genome | Oral Paper | Landis, Jacob; De La Cerda, Gisel; Hernandez, Adriana; Zhang, Jing; Powell, Adrian; Givnish, Thomas; Specht, Chelsea; Strickler, Susan. | Calochortus
monocot
genome assembly
Nanopore |
| CGT3003 | July 25th 2:00 pm | Birch/Hilton | EASEL (Efficient, Accurate, Scalable Eukaryotic modeLs), a tool for improvement of eukaryotic genome annotation | Oral Paper | Webster, Cynthia; Shrestha, Bikash; Zaman, Sumaira; Vuruputoor, Vidya; Bennett, Jeremy; Monyak, Daniel; Richter, Peter; Bhattarai, Akriti; Fetter, Karl; Wegrzyn, Jill. | |
| CGT3004 | July 25th 2:15 pm | Birch/Hilton | Determining the genomic architecture of Thalictrum sexual dimorphism | Oral Paper | Sain, Melody; Baum, David. | Dioecy
sex determination
genomics
Evolution
homeotic
eudicot
Sexual system
k-mer
short read data |
| CGT3005 | July 25th 2:30 pm | Birch/Hilton | Omic strategies for identification of Amaranth species | Oral Paper | Hubert, Julia; Kyte, Sarah; Charron, Andréanne; Colville, Adam; Klein, Daniel; Brière, Stephan C.; Gagnon, Marie-Claude; Galindo Gonzalez, Leonardo Miguel. | amaranths
Amaranthus palmeri
genome skimming
chloroplast sequencing
Comparative -omics
protein biotyping
DNA barcoding |
| CGT3006 | July 25th 2:45 pm | Birch/Hilton | Evolutionary dynamics of orchid mitogenomes | Oral Paper | Valencia-D., Janice; Neubig, Kurt. | mitogenome
Evolution
Orchidaceae
Genome rearrangement
Horizontal Gene Transfer |
| CGT3007 | July 25th 3:00 pm | Birch/Hilton | Transcriptomic analysis of asymptomatic variety pepper (Capsicum annuum) against the tomato brown rugose fruit virus (ToBRFV) | Oral Paper | Hernandez-Gonzalez, Alam. | RNA-Seq
Transcriptomics
bell pepper
bioinformatic |
|
| CGT4001 | July 25th 3:45 pm | Birch/Hilton | Plagiarism in the Poaceae: the role of lateral gene transfer in grass evolution | Oral Paper | Dunning, Luke; Raimondeau, Pauline; Bianconi, Matheus; Pereira, Lara; Parisod, Christian; Christin, Pascal-Antoine. | phylogenomics
Poaceae
lateral gene transfer |
| CGT4002 | July 25th 4:00 pm | Birch/Hilton | Phylogenetically localizing and dating the mesohexaploidy of the tribe Brassiceae | Oral Paper | Thomas, Shawn; Abrahams, Richard; Harkess, Alex; Washburn, Jacob; Pires, Joseph; Arias, Tatiana. | Transcriptomics
phylogenomics
whole genome duplication
polyploidy
Brassicaceae |
| CGT4003 | July 25th 4:15 pm | Birch/Hilton | Patterns of plastid genome evolution across parasitic and mycoheterotrophic plants | Oral Paper | Stone, Philippa; Lam, Vivienne; Darby, Hayley; Graham, Sean. | Chloroplast genome
mycoheterotrophs
Parasitic |
| CGT4004 | July 25th 4:30 pm | Birch/Hilton | Plastome Structural Evolution in Neo-Astragalus (Astragalus L., Fabaceae) | Oral Paper | Charboneau, Joseph; Cronn, Richard; Liston, Aaron; Wojciechowski, Martin; Sanderson, Michael. | Chloroplast genome
Leguminosae
inverted repeat-lacking clade
inversion mechanisms |
| CGT4005 | July 25th 4:45 pm | Birch/Hilton | Plastid phylogenomics and molecular evolution of fully mycoheterotrophic Thismiaceae | Oral Paper | Garrett, Natalie (Lis); Viruel, Juan; Klimpert, Nathaniel; Soto Gomez, Marybel; Lam, Vivienne; Merckx, Vincent; Graham, Sean. | Plastid genome degradation
Purifying selection
Mycoheterotrophy
Heme biosynthesis
Genome rearrangement
Gene loss |
| CGT4006 | July 25th 5:00 pm | Birch/Hilton | An estimate of gene content and chromosomal organization in the last common ancestor of extant angiosperms | Oral Paper | Leebens-Mack, Jim. | Amborella trichopoda
comparative genomics
Karyotype Evolution
Angiosperms |
| CGT4007 | July 25th 5:15 pm | Birch/Hilton | Chromosome-scale reference genome and RAD based genetic map of yellow starthistle (Centaurea solstitialis) reveal putative structural variation and QTLs associated with invader traits | Oral Paper | Reatini, Bryan; Cang, Alice; Jiang, Qiuyu; Dlugosch, Katrina. | Yellow starthistle
genome assembly
genetic map
QTL mapping |
|
| PGT001 | July 25th 5:30 pm | Idlughet (Eklutna) Exhibit Hall/Dena'ina Center | The Penstemon kunthii draft genome: integrating a genetic map with assembled sequence | Poster: Comparative Genomics/Transcriptomics | Schlenk, Noelle; Wessinger, Carolyn; Hileman, Lena. | Penstemon
genome assembly
genetic map |
| PGT002 | July 25th 5:30 pm | Idlughet (Eklutna) Exhibit Hall/Dena'ina Center | The conservation of sexual systems and sex-determining regions in the dioecious species of Myricaceae | Poster: Comparative Genomics/Transcriptomics | Akozbek, Laramie; Carey, Sarah; Hale, Haley; Leslie, Goertzen; Harkess, Alex. | Dioecy
Myricaceae
k-mer
Sex chromosome
sex-determining region |
| PGT003 | July 25th 5:30 pm | Idlughet (Eklutna) Exhibit Hall/Dena'ina Center | Effect of light intensity on thinleaf huckleberry (Vaccinium membranaceum Douglas ex Torr.) flavonoid biosynthesis | Poster: Comparative Genomics/Transcriptomics | Yin, Shuhan; Drummond, Chloe; Renner, Tanya. | Huckleberry
Light
Flavonoid Biosynthesis
metabolomics
Transcriptomics |
| PGT004 | July 25th 5:30 pm | Idlughet (Eklutna) Exhibit Hall/Dena'ina Center | Identifying and Classifying Potential Disease Resistance Genes in White Pines | Poster: Comparative Genomics/Transcriptomics | Bhattarai, Akriti; Wegrzyn, Jill. | Transcriptomics
disease resistance |
| PGT005 | July 25th 5:30 pm | Idlughet (Eklutna) Exhibit Hall/Dena'ina Center | Progress on the Open Green Genomes Project, a DOE Joint Genome Institute Community Science Program Initiative | Poster: Comparative Genomics/Transcriptomics | Leebens-Mack, Jim. | comparative genomics
Vascular Plants
Embryophytes |
| PGT006 | July 25th 5:30 pm | Idlughet (Eklutna) Exhibit Hall/Dena'ina Center | Generating transcriptome data to reveal genetic mechanisms of floral traits in multiple species of Calochortus (Liliaceae) | Poster: Comparative Genomics/Transcriptomics | Landis, Jacob; Hernandez, Adriana; Tribble, Carrie; Eifler, Evan; Givnish, Thomas; Strickler, Susan; Specht, Chelsea. | Calochortus
Nanopore
transcriptome
functional traits
comparative transcriptomics |
| PGT007 | July 25th 5:30 pm | Idlughet (Eklutna) Exhibit Hall/Dena'ina Center | Evolution of flooding tolerance in maize relatives | Poster: Comparative Genomics/Transcriptomics | Deb, Sontosh; Adhikari, Bishnu; Hofford, Nathaniel; MacNeill, Bryan; Motley, M'Kayla; McKain, Michael. | climate change
flooding
gene expression
Root anatomy
Aerenchyma
Wild relatives
polyploidy |
Tuesday, July 26th |
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|
| CGT5001 | July 26th 8:00 am | Katmai/Hilton | Identification of Ni tolerance and low Ca tolerance QTL in Caulanthus amplexicaulis | Oral Paper | Garza, Elyssa; Daundasekara, Kasuni; Pepper, Alan. | Abiotic stress
metal
Nickel
genome
Brassicaceae
low calcium
Serpentine |
| CGT5002 | July 26th 8:15 am | Katmai/Hilton | Inference of developmental trajectories from single-cell sequencing data | Oral Paper | Shushkov, Philip. | Transcriptomics
cell type
developmental trajectory
xylem
Phloem |
| CGT5003 | July 26th 8:30 am | Katmai/Hilton | Energy allocation and senescence in the transition between annual and perennial populations of Draba albertina | Oral Paper | Sipperly, Nicolette; Carlson, David; Tacatta, Jorgen; Davalos, Liliana; Bomblies, Kirsten. | life history
Disposable soma
gene expression |
| CGT5004 | July 26th 8:45 am | Katmai/Hilton | The divergent genetic networks underlying the convergent evolution of seed shattering in rice | Oral Paper | Li, Xiang; Caicedo, Ana. | convergent evolution
seed dispersal
Rice
transcriptomes |
| CGT5005 | July 26th 9:00 am | Katmai/Hilton | Comparative genomics offers new insights into the evolution of the heterostyly supergen | Oral Paper | Conti, Elena; Potente, Giacomo; Narjes, Yousefi; Keller, Barbara. | Supergene
convergent evolution
Primulaceae
reproductive biology
Heterostyly
Floral dimorphism
floral evolution
Gene duplication
Suppression of recombination |
| CGT5006 | July 26th 9:15 am | Katmai/Hilton | Flavonoid expression in Vaccinium membranaceum Douglas ex Torr. leaves across gradients of latitude and elevation | Oral Paper | Drummond, Chloe; Yin, Shuhan; Renner, Tanya. | Flavonoid Biosynthesis
Huckleberry
Transcriptomics
Latitude
Elevation
Landscape Transcriptomics |
| CGT5007 | July 26th 9:30 am | Katmai/Hilton | Canceled The drivers and consequences of sex chromosome turnover in strawberries | Oral Paper | Cauret, Caroline; Sternberger, Anne; Liston, Aaron; Ashman, Tia-Lynn. | Strawberries
Sex chromosome
transcriptome |
