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| Session | Date/Time | Title | Section/Topic | Type | Authors | Keywords |
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Sunday, July 24th |
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| W14001 | July 24th 10:00 am | Canceled Teaching Climate Change in a Botanical Context | Conference Wide | Workshop | Krakos, Kyra Neipp; Soltis, Pamela; Koptur, Suzanne. | |
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| W16001 | July 24th 12:30 pm | Taking the Pain Out of Assessment: How to Measure Impact in Classrooms and Beyond | Conference Wide | Workshop | Parsley, Kathryn; Callis-Duehl, Kris. | |
Monday, July 25th |
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| CGT1001 | July 25th 8:15 am | Impacts of allopolyploidy on gene expression in Nicotiana section Repandae | Comparative Genomics/Transcriptomics | Paper | Ostovar, Talieh; Landis, Jacob; McCarthy, Elizabeth; Stajich, Jason; Waters, Elizabeth; Litt, Amy. | Nicotiana
allopolyploidy
comparative transcriptomics
hybrids |
| CGT1002 | July 25th 8:30 am | Comparative transcriptomics provides insights into the genetic mechanisms regulating functional floral traits across Calochortus (Liliaceae) | Comparative Genomics/Transcriptomics | Paper | Hernandez, Adriana; Landis, Jacob; Tribble, Carrie; Eifler, Evan; Givnish, Thomas; Strickler, Susan; Specht, Chelsea. | RNA-Seq
Floral traits
trichomes
comparative transcriptomics
gene expression |
| CGT1003 | July 25th 8:45 am | Transcriptomics of seasonal leaf senescence in a deciduous conifer (Larix laricina) | Comparative Genomics/Transcriptomics | Paper | Amee, Maurice; Cobo, Irene; Scott, Alison; Maher, Olivia; Wegrzyn, Jill. | comparative transcriptomics
seasonal senescence
RNA-Seq
conifer
differential gene expression |
| CGT1004 | July 25th 9:00 am | Grow and then Show: understanding inducible phenotypes in solanum lycopersicum through transcriptomic analysis | Comparative Genomics/Transcriptomics | Paper | Quinchiguango Archuleta, Inti. | |
| CGT1005 | July 25th 9:15 am | Multi-omic investigation of stress responses in Sea beet (Beta vulgaris ssp. maritima, Amaranthaceae) and preliminary metabolomics data in Ice Plant (Mesembryanthemum crystallinum, Aizoaceae) | Comparative Genomics/Transcriptomics | Paper | Radford, Zachary; Crum, Alexandra; Fredericksen, Brett; Schaut, Madelyn; Maeda, Hiroshi; Yang, Ya. | Co-expression network
Chenopodiaceae
Caryophyllales
time course
hyperspectral imaging
metabolite profiling
HPLC
transcriptome
quantum yield
stress experiments
high light
methyl jasmonate
salt stress
halophyte
betalain |
| CGT1006 | July 25th 9:30 am | A drought GxE experiment reveals patterns of differential expression and drought tolerance genes in Artemisia tridentata (big sagebrush; Asteraceae) | Comparative Genomics/Transcriptomics | Paper | Melton, Anthony; Navock, Kara; Ellestad, Paige; Martinez, Peggy; Morales, Walker; Milliken, Erin; Serpe, Marcelo; Novak, Stephen; Buerki, Sven. | sagebrush
gene expression
drought |
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| CGT2001 | July 25th 10:15 am | Ancient yet Dynamic: The Evolution of a Fern Genome | Comparative Genomics/Transcriptomics | Paper | Marchant, Daniel Blaine; Soltis, Douglas; Soltis, Pamela; Leebens-Mack, Jim; Chen, Zhonghua. | fern
polyploidy
Horizontal Gene Transfer
genomics
Plant Evolution |
| CGT2002 | July 25th 10:30 am | Exploring the structural variation and genome inheritance patterns using three generation red oak pedigree | Comparative Genomics/Transcriptomics | Paper | Kapoor, Beant; Jenkins, Jerry; Schmutz, Jeremy; Zhebentyayeva, Tetyana; Kulheim, Carsten; Lasky, Jesse; Leites, Laura; Schlarbaum, Scott; Carlson, John E.; Staton, Margaret; Coggeshall, Mark; Romero-Severson, Jeanne; Islam-Faridi, Nurul. | Northern red oak
Reference genome
Structural variation
Haplotype blocks
Recombination breakpoints |
| CGT2003 | July 25th 10:45 am | Tracking a Cryptic Invader of the Vancouver Wetland with Genetics and Morphology< | Comparative Genomics/Transcriptomics | Paper | Buckholtz, Gracy. | Typha
Estuary
Microsatellite
Invasive
Cattail
Vancouver |
| CGT2004 | July 25th 11:00 am | Hijacking a metagenomic strategy for rapid comparative subgenomics for polyploids and their progenitors | Comparative Genomics/Transcriptomics | Paper | Reynolds, Gillian; Mumey, Brendan; Strnadova-Neeley, Veronika; Lachowiec, Jennifer. | genomics
polyploidy
bioinformatics |
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| CGT3001 | July 25th 1:30 pm | Balancing read length and sequencing depth: optimizing Nanopore long-read sequencing for monocots with an emphasis on Liliales | Comparative Genomics/Transcriptomics | Paper | De La Cerda, Gisel; Landis, Jacob; Hernandez, Adriana; Tribble, Carrie; Eifler, Evan; Li, Fay-Wei; Zhang, Jing; Karimi, Nisa; Chan, Patricia; Givnish, Thomas; Strickler, Susan; Specht, Chelsea. | Nanopore
genome sequencing
Calochortus
monocot |
| CGT3002 | July 25th 1:45 pm | Utilizing the long and the short: comparison of different genome assembly programs for a 5.5 GB Liliales genome | Comparative Genomics/Transcriptomics | Paper | Landis, Jacob; De La Cerda, Gisel; Hernandez, Adriana; Zhang, Jing; Powell, Adrian; Givnish, Thomas; Specht, Chelsea; Strickler, Susan. | Calochortus
monocot
genome assembly
Nanopore |
| CGT3003 | July 25th 2:00 pm | EASEL (Efficient, Accurate, Scalable Eukaryotic modeLs), a tool for improvement of eukaryotic genome annotation | Comparative Genomics/Transcriptomics | Paper | Webster, Cynthia; Shrestha, Bikash; Zaman, Sumaira; Vuruputoor, Vidya; Bennett, Jeremy; Monyak, Daniel; Richter, Peter; Bhattarai, Akriti; Fetter, Karl; Wegrzyn, Jill. | |
| CGT3004 | July 25th 2:15 pm | Determining the genomic architecture of Thalictrum sexual dimorphism | Comparative Genomics/Transcriptomics | Paper | Sain, Melody; Baum, David. | Dioecy
sex determination
genomics
Evolution
homeotic
eudicot
Sexual system
k-mer
short read data |
| CGT3005 | July 25th 2:30 pm | Omic strategies for identification of Amaranth species | Comparative Genomics/Transcriptomics | Paper | Hubert, Julia; Kyte, Sarah; Charron, Andréanne; Colville, Adam; Klein, Daniel; Brière, Stephan C.; Gagnon, Marie-Claude; Galindo Gonzalez, Leonardo Miguel. | amaranths
Amaranthus palmeri
genome skimming
chloroplast sequencing
Comparative -omics
protein biotyping
DNA barcoding |
| CGT3006 | July 25th 2:45 pm | Evolutionary dynamics of orchid mitogenomes | Comparative Genomics/Transcriptomics | Paper | Valencia-D., Janice; Neubig, Kurt. | mitogenome
Evolution
Orchidaceae
Genome rearrangement
Horizontal Gene Transfer |
| CGT3007 | July 25th 3:00 pm | Transcriptomic analysis of asymptomatic variety pepper (Capsicum annuum) against the tomato brown rugose fruit virus (ToBRFV) | Comparative Genomics/Transcriptomics | Paper | Hernandez-Gonzalez, Alam. | RNA-Seq
Transcriptomics
bell pepper
bioinformatic |
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| CGT4001 | July 25th 3:45 pm | Plagiarism in the Poaceae: the role of lateral gene transfer in grass evolution | Comparative Genomics/Transcriptomics | Paper | Dunning, Luke; Raimondeau, Pauline; Bianconi, Matheus; Pereira, Lara; Parisod, Christian; Christin, Pascal-Antoine. | phylogenomics
Poaceae
lateral gene transfer |
| CGT4002 | July 25th 4:00 pm | Phylogenetically localizing and dating the mesohexaploidy of the tribe Brassiceae | Comparative Genomics/Transcriptomics | Paper | Thomas, Shawn; Abrahams, Richard; Harkess, Alex; Washburn, Jacob; Pires, Joseph; Arias, Tatiana. | Transcriptomics
phylogenomics
whole genome duplication
polyploidy
Brassicaceae |
| CGT4003 | July 25th 4:15 pm | Patterns of plastid genome evolution across parasitic and mycoheterotrophic plants | Comparative Genomics/Transcriptomics | Paper | Stone, Philippa; Lam, Vivienne; Darby, Hayley; Graham, Sean. | Chloroplast genome
mycoheterotrophs
Parasitic |
| CGT4004 | July 25th 4:30 pm | Plastome Structural Evolution in Neo-Astragalus (Astragalus L., Fabaceae) | Comparative Genomics/Transcriptomics | Paper | Charboneau, Joseph; Cronn, Richard; Liston, Aaron; Wojciechowski, Martin; Sanderson, Michael. | Chloroplast genome
Leguminosae
inverted repeat-lacking clade
inversion mechanisms |
| CGT4005 | July 25th 4:45 pm | Plastid phylogenomics and molecular evolution of fully mycoheterotrophic Thismiaceae | Comparative Genomics/Transcriptomics | Paper | Garrett, Natalie (Lis); Viruel, Juan; Klimpert, Nathaniel; Soto Gomez, Marybel; Lam, Vivienne; Merckx, Vincent; Graham, Sean. | Plastid genome degradation
Purifying selection
Mycoheterotrophy
Heme biosynthesis
Genome rearrangement
Gene loss |
| CGT4006 | July 25th 5:00 pm | An estimate of gene content and chromosomal organization in the last common ancestor of extant angiosperms | Comparative Genomics/Transcriptomics | Paper | Leebens-Mack, Jim. | Amborella trichopoda
comparative genomics
Karyotype Evolution
Angiosperms |
| CGT4007 | July 25th 5:15 pm | Chromosome-scale reference genome and RAD based genetic map of yellow starthistle (Centaurea solstitialis) reveal putative structural variation and QTLs associated with invader traits | Comparative Genomics/Transcriptomics | Paper | Reatini, Bryan; Cang, Alice; Jiang, Qiuyu; Dlugosch, Katrina. | Yellow starthistle
genome assembly
genetic map
QTL mapping |
Tuesday, July 26th |
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| EPH1001 | July 26th 10:15 am | Finding genes responsible for evolution of complex 3D leaf anatomy using tomographic microscopy | Ecophysiology | Paper | Muir, Christopher; Bonnin, Anne; Buckley, Thomas N; Conesa, Miquel À; Galmés, Jeroni; McKlin, Sam; Rippner, Devin A; Schmeltz, Margaux; Théroux-Rancourt, Guillaume. | 3D leaf complexity
Leaf carbon‐water exchange
Anatomy
Solanum
Stomata
QTL
X‐ray microcomputed tomography |
| EPH1002 | July 26th 10:30 am | Using a Machine Learning approach to study functional trait diversification in Helianthus | Ecophysiology | Paper | Majumder, Sambadi; Mason, Chase. | sunflower
Helianthus
Machine Learning
functional traits
Evolutionary biology
ecophysiology
Algorithms |
| EPH1003 | July 26th 10:45 am | Reconciling patterns of trait and niche evolution in polyploid plants | Ecophysiology | Paper | Krieg, Christopher; Watts, Jacob; Sessa, Emily. | polyploidy
ecological niche
trait differentiation
niche differentiation |
| EPH1004 | July 26th 11:00 am | Restoring the Roan: Red Spruce Forest Understory Responses to Canopy Gaps at Roan Mountain, NC | Ecophysiology | Paper | Hennessey, Thomas Moore. | ecophysiology
restoration
plant ecology |
| EPH1005 | July 26th 11:15 am | Trait Variation as Plants Grow Up: Simultaneous Effects of Ontogeny and Phenotypic Plasticity | Ecophysiology | Paper | Flores, Ana I.; Barton, Kasey. | Phenotypic plasticity
Ontogeny
ontogenetic trajectory
leaf traits
Resource allocation
functional traits
spinescence |
| EPH1006 | July 26th 11:30 am | Using Eco-Physiology to Inform Conservation Outcomes: Photosynthetic Responses to Salinity in Two Endangered Alkali Vernal Pool Species of Atriplex | Ecophysiology | Paper | Mirza, Humera; Arteaga, Marc; Santiago, Louis. | ecophysiology
threatened species
endangered species
Atriplex coronata
Atriplex parishii
Chlorophyll fluorescence
salinity tolerence |
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| EPH2001 | July 26th 2:00 pm | Is climate warming beneficial to the wild blueberry, a temperate North American crop? | Ecophysiology | Paper | Zhang, Yongjiang. | Water use
photosynthesis
Crop yield
climate change
Vaccinium angustifolium
Pathogen
Water stress |
| EPH2002 | July 26th 2:15 pm | Structural and functional leaf diversity explain variation in photosynthetic capacity across J. regia accessions | Ecophysiology | Paper | Momayyezi, Mina; McElrone, Andrew. | leaf traits
Leaf anatomy
CO2 diffusion
Photosynthetic capacity
stress |
| EPH2003 | July 26th 2:30 pm | Exploring the relationship between anthocyanin structure and function in plant-environment interactions | Ecophysiology | Paper | Hughes, Nicole Michelle; Wommack, Andrew; Lila, Mary Ann. | Anthocyanin
Photoprotection
herbivory
chemotaxonomy |
| EPH2004 | July 26th 2:45 pm | Comparative analysis of autumn leaf coloration across North America | Ecophysiology | Paper | Heberling, Mason; Hughes, Nicole M.; George, Christian O.; Lee, Ben; Neufeld, Howard; Webb, Campbell O; Lee, David W.. | Anthocyanin
leaf senescence
Photoprotection
xanthophylls
autumn |
| EPH2005 | July 26th 3:00 pm | Hurricane effects on restored seagrass corridors in Texas | Ecophysiology | Paper | Schwarz, Arthur; Thorhaug, Anitra; Berlyn, Graeme. | Seagrass shoaling
seagrass restoration
Seagrass stabilization of shorelines
Halodule wrightii stabilization of shorelines
Halodule wrightii restoration shorelines Texas |
| July 26th 3:15 pm | Break | Ecophysiology | | | |
| EPH2007 | July 26th 3:45 pm | Intra-canopy leaf variation in deciduous oaks (genus Quercus): from leaf construction to energy return | Ecophysiology | Paper | Garnica Diaz, Claudia Juliana; Machado, Siddarth; Castillo-Argaez, Raiza; Smith, Nicholas Ash; Johnson, Daniel J.; John, GRACE PATRICIA. | LMA
economic spectrum
wilting point
Amax |
| EPH2008 | July 26th 4:00 pm | Phenotypic plasticity and selection on leaf traits in response to snowmelt timing and summer precipitation | Ecophysiology | Paper | Navarro, Jocelyn; Powers, John; Paul, Ayaka; Campbell, Diane. | adaptive plasticity
Ipomopsis aggregata
vegetative traits
Phenotypic plasticity
precipitation
snowmelt
stomatal conductance
water use efficiency |
| EPH2009 | July 26th 4:15 pm | Ecophysiological explanations for spatial and temporal variations in autumnal coloration within the canopies of ornamental red maple (Acer rubrum ‘Armstrong’) and Freeman maple (Acer x freemanii) | Ecophysiology | Paper | Martin, Claire; Neufeld, Howard. | |
| EPH2010 | July 26th 4:30 pm | Effects of nitrogen and phosphorus addition on early regeneration and root shoot growth in hemiepiphytic and non-hemiepiphytic Ficus species | Ecophysiology | Paper | Rong, Huang; Huang, Lanqing; Lei, Xiaozhou; Fang, Chuangwei; Castillo-Díaz, Diana; Chen, Huayang; Wen, Bin; Cao, Kun-Fang; Zhu, Shidan; Manage Goodale, Uromi. | Early regeneration
Ficus
Nitrogen addition
Phosphorus addition
Root aging
Root complexity
Root shoot length ratio |
Wednesday, July 27th |
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| July 27th 7:00 am | Genetics Section Business Meeting | Conference Wide | | | |
