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| Session | Date/Time | Title | Section/Topic | Type | Authors | Keywords |
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Sunday, July 24th |
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| July 24th 9:00 am | Developing CRISPR systems in non-genetic plant models: from plasmid design to transgenic plant | Conference Wide | | | |
|
| W21001 | July 24th 1:00 pm | The Promises and Perils of Pigments Part2: Quantifying Flower Color Across Scales (Part 1 was presented at Botany 2021) | Conference Wide | Workshop | Whittall, Justen; Narbona, Eduardo; del Valle, Jose Carlos; Berardi, Andrea. | |
Monday, July 25th |
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|
| PHYLO I001 | July 25th 8:00 am | Whom to trust when a microsynteny-based topology differs drastically from sequence-based phylogenies: the Juglandaceae as a test case | Phylogenomics | Paper | Renner, Susanne S.; Bai, Wei-Ning; Zhang, Da-Yong. | Microsynteny
Gene content
allopolyploidy
gene-content-based tree
whole-genome duplication
introgression |
| PHYLO I002 | July 25th 8:15 am | Whom to trust wehn a microsynteny- and gene-content-based topology differs drastically from sequenced-based trees: Juglandaceae as a test case | Phylogenomics | Paper | Renner, Susanne S.; Bai, Wei-Ning; Zhang, Da-Yong. | allopolyploidy
DNA repair
gene-content-based tree
whole-genome duplication
introgression |
| PHYLO I003 | July 25th 8:30 am | Trait diversity – a novel phylodiversity measure to investigate eco-evolutionary mechanisms of community assembly | Phylogenomics | Paper | Borokini, Israel; Allen, Julie; Smith, Stephen; Guralnick, Robert; Soltis, Pamela; Soltis, Douglas; Laffan, Shawn; Mishler, Brent. | trait diversity |
| PHYLO I004 | July 25th 8:45 am | Untying Gordian knots: Unraveling reticulate polyploid plant evolution by RRS genomic data using a large non-model species complex | Phylogenomics | Paper | Karbstein, Kevin; Tomasello, Salvatore; Hodac, Ladislav; Wagner, Natascha; Marincek, Pia; Barke, Birthe Hilkka; Pätzold, Claudia; Hörandl, Elvira. | allopolyploidy
apomixis
genome composition
Hyb-Seq
nuclear genes
plastome data
RAD-Seq
Ranunculus auricomus |
| PHYLO I005 | July 25th 9:00 am | Hybridization in Octoploid Fragaria | Phylogenomics | Paper | Mortimer, Sebastian; Ashman, Tia-Lynn; Liston, Aaron. | WGS
Fragaria
hybridization |
| PHYLO I006 | July 25th 9:15 am | Phylogenomic analyses based on nuclear and plasmid data yield novel insights into the reticulate evolution of Asarum (Aristolochiaceae) | Phylogenomics | Paper | Zuo, Lei; Freudenstein, John. | Asarum
reticulate evolution |
| PHYLO I007 | July 25th 9:30 am | Differential role of climatic niche in colonization and in-situ evolutionary processes of Macaronesian ivies (Hedera L., Araliaceae) | Phylogenomics | Paper | Gallego-Narbón, Angélica; Alonso Hernandez, Alejandro; Valcarcel, Virginia; Fernandez-Mazuecos Santa Teresa, Mario. | Hedera
Macaronesia
Climatic niche
phylogenomics
GBS |
| July 25th 9:45 am | Break | Phylogenomics | | | |
| PHYLO I009 | July 25th 10:15 am | Reconstructing evolutionary relationships in the genus Packera (Asteraceae: Senecioneae) | Phylogenomics | Paper | Moore, Erika; Mandel, Jennifer. | chloroplast
nuclear genes
paralogs
phylogenomics
polyploidy |
| PHYLO I010 | July 25th 10:30 am | Red gold or corn silk? Detecting economic adulteration in the world’s most expensive spice: saffron | Phylogenomics | Paper | Hunter, Elizabeth; Literman, Robert; Handy, Sara. | saffron
genome skimming
adulteration
economic adulteration
genomics |
| PHYLO I011 | July 25th 10:45 am | Characterization of the entire USDA germplasm collection of Amaranthus | Phylogenomics | Paper | Hoffberg, Sandra; Eaton, Deren. | RADseq
crop
collection |
| PHYLO I012 | July 25th 11:00 am | Evolution of Asparagus: multiple origins of dioecy and sex chromosomes | Phylogenomics | Paper | Bentz, Philip; Carey, Sarah; Harkess, Alex; Leebens-Mack, Jim. | comparative genomics
asparagus
asparagaceae
Monocots
Evolution
Dioecy
sex chromosomes
sex-determination |
| PHYLO I013 | July 25th 11:15 am | Completing the angiosperm tree of life - over half-way there | Phylogenomics | Paper | Baker, William; PAFTOL, Team. | phylogenomics
Angiosperms353
Open Access
herbariomics
target-capture
Hyb-Seq
Angiosperms
tree of life |
| PHYLO I014 | July 25th 11:30 am | A comprehensive phylogenomic tree of life sheds new light on angiosperm diversification | Phylogenomics | Paper | Carruthers, Tom; Zuntini, Alexandre R.; Antonelli, Alexandre; Bellot, Sidonie; Crayn, Darren; Eiserhardt, Wolf L; Forest, Felix; Grace, Olwen; Smith, Stephen; Baker, William. | phylogenomics
Angiosperms
Angiosperms353
macroevolution
Diversification |
| PHYLO I015 | July 25th 11:45 am | Environment and geography drive diversification within the Amazon tree, Protium subserratum | Phylogenomics | Paper | Misiewicz, Tracy. | Amazon
speciation
Ecological divergence
soils
Tropical biodiversity |
| PHYLO I016 | July 25th 12:00 pm | Resolving taxonomic uncertainty and clarifying species boundaries in the Cymopterus terebinthinus species complex | Phylogenomics | Paper | Taylor, Annie; Smith, James (Jim); Mansfield, Don; Feist, Mary Ann; Buerki, Sven; Darrach, Mark. | phylogenetics
species delimitation
Apiaceae
Angiosperms353
species complex
next generation sequencing |
|
| BIOG I001 | July 25th 1:30 pm | Historical biogeography of Caribbean endemic plants: insight from dated phylogenetic trees contributes to paleogeography of the region | Biogeography | Paper | Roncal, Julissa; Nieto-Blazquez, Maria Esther; Cardona, Agustin; Bacon, Christine. | colonization
divergence time
endemic flora
GAARlandia
in situ speciation
time-for-speciation
vicariance
West Indies |
| BIOG I002 | July 25th 1:45 pm | GreenMaps: a Tool for Addressing the Wallacean Shortfall in the Global Distribution of Plants | Biogeography | Paper | Daru, Barnabas. | Citizen Science
Plant Biogeography
Species Distribution Modeling
Vascular Plants |
| BIOG I003 | July 25th 2:00 pm | Addressing Darwin’s naturalization conundrum using native and naturalized species using disjunct genera that occur in Eastern North America and Eastern Asia | Biogeography | Paper | Liu, Yunpeng; Heberling, Mason; Wang, Zhiheng; Soltis, Douglas; Soltis, Pamela. | Eastern Asia – Eastern North America floristic disjunction
Plant invasion
Naturalization
Preadaptation
Climatic niches |
| BIOG I004 | July 25th 2:15 pm | Phylogeography of Streptopus lanceolatus (Liliaceae): a North American endemic with a curious pattern of disjunction among the Pacific Northwest, Upper Midwest, and Eastern Appalachia | Biogeography | Paper | Cameron, Kenneth; Wang, Shenyi. | Glaciation
Monocots
Liliales
Regugia
GBS
Driftless Area
Phylogeography |
| BIOG I005 | July 25th 2:30 pm | Species delimitation at marginal areas: Range expansion of the apomictic polyploid Ranunculus auricomus complex following the Last Glacial Maximum | Biogeography | Paper | Bradican, John Paul; Karbstein, Kevin; Tomasello, Salvatore; Dunkel, Franz; Pätzold, Claudia; Hodač, Ladislav; Hörandl, Elvira. | biogeography
polyploidy
Ranunculus auricomus
Target Enrichment
apomixis
arctic
Subarctic |
| BIOG I006 | July 25th 2:45 pm | Effects of climatic fluctuations and restricted gene flow on the fragmented distribution pattern of Tertiary relict conifer Pseudotaxus chienii (Taxaceae) revealed by chloroplast and nuclear markers | Biogeography | Paper | Li, Ning; Su, Yingjuan; Wang, Ting. | Pseudotaxus chienii
Phylogeography
ecological niche modelling
climatic fluctuations
gene flow
fragmented distribution pattern |
| July 25th 3:00 pm | Break | Biogeography | | | |
| BIOG I008 | July 25th 3:45 pm | Canceled The mystery of North American shrub birches: from researchers to detectives | Biogeography | Paper | Touchette, Lyne; Godbout, Julie; Lamothe, Manuel; Isabel, Nathalie; Porth, Ilga. | Betula glandulosa
genomics
biogeography
shrub
North American birches
nuclear DNA
chloroplast DNA
ploidy level |
| BIOG I009 | July 25th 4:00 pm | Canceled Climate and geographic distance drive phylogenetic regionalization in the world's tree flora | Biogeography | Paper | Monks, Logan; Davies, Stuart; Swenson, Nathan. | Trees
forests
Phylogenetic beta-diversity
Biogeographic regions |
| BIOG I010 | July 25th 4:15 pm | Understanding Phylogenetic Diversity and Endemism in the Greater Antilles: Caribbean Melastomes as a Case Test Example | Biogeography | Paper | Naranjo, Andre; Majure, Lucas. | Melastomes
phylogenetic diversity
endemism
CANAPE
Greater Antilles |
| BIOG I011 | July 25th 4:30 pm | Areas of Endemism of Plants in Southcentral and Southwestern Nearctic Region | Biogeography | Paper | Saghatelyan, Anna. | areas of endemism
biogeographic patterns
Madrean
SW Deserts
regionalization |
| BIOG I012 | July 25th 4:45 pm | Uncovering the biogeographic history of the Neotropical Tillandsia subgenus Tillandsia | Biogeography | Paper | Vera Paz, Sandra Itzel; Díaz Contreras Díaz, D. D; Montes-Azcue, Claudia; Jost, Matthias; Hernández-Gutiérrez, Rebeca; Magallon, Susana; Sánchez Gonzáles, Luis Antonio; Salazar, Gerardo; Wanke, Stefan; Granados Mendoza, Carolina. | Tillandsia
plastome
Neotropics |
| BIOG I013 | July 25th 5:00 pm | Examining broad geographic patterns of Rhodohypoxis baurii (Baker) Nel. var. platypetala Hilliard & Burtt cytotypes in the Drakensberg, South Africa | Biogeography | Paper | Mtileni, Masingitla; Glennon, Kelsey. | Hypoxidaceae
Mountain grasslands endemic
Environmental distribution
polyploidy |
Tuesday, July 26th |
|---|
|
| SYM1001 | July 26th 8:00 am | The physiology of phylloplane pH regulation and its consequences on the microbiome | Symbioses: Plant, Animal, and Microbe Interactions | Paper | Gilbert, Kadeem; Renner, Tanya. | phylloplane pH
Gossypium
Nepenthes
Beta vulgaris
Transcriptomics
metatranscriptomics |
| SYM1002 | July 26th 8:15 am | Diversity of plants foraged by two solitary wild bees | Symbioses: Plant, Animal, and Microbe Interactions | Paper | Puppo, Pamela; Martins, Filipa; Thompson, Madeline; Ferguson, Beth; Rinehart, Joseph; Bowsher, Julia; Greenlee, Kendra; Prasifka, Jarrad. | Pollination
Crops
sunflower
alfalfa
Bees |
| SYM1003 | July 26th 8:30 am | A Call To Reconceptualize Lichen Symbioses | Symbioses: Plant, Animal, and Microbe Interactions | Paper | Allen, Jessica; Lendemer, James. | |
| SYM1004 | July 26th 8:45 am | Corallorhiza striata is a “double parasite” and the first case of sexually deceptive pollination known among North American orchids | Symbioses: Plant, Animal, and Microbe Interactions | Paper | Freudenstein, John; Barrett, Craig. | parasitism
Orchidaceae
Pollination |
| SYM1005 | July 26th 9:00 am | The Inside Story: Microbes Living Within Plant Tissues | Symbioses: Plant, Animal, and Microbe Interactions | Paper | Martínez Hidalgo, María Pilar; Khan, Noor; HUMM, ETHAN; JAYAKARUNAKARAN, AKSHAYA; Hirsch, Ann. | nodule microbiome
alfalfa
Plant growth-promoting bacteria |
| SYM1006 | July 26th 9:15 am | Foraging behavior of Indian honeybee: Are bees specialists at an individual level? | Symbioses: Plant, Animal, and Microbe Interactions | Paper | Dandavate, Rohan; S, Sandhya; Shrotri, Saket; Kaur, Sukhraj; Gowda, Vinita. | Apis cerana indica
Floral Constancy
pollen |
|
| SYM2001 | July 26th 10:15 am | Grafted grapevine microbiota varies across space, time, and scion/rootstock combinations | Symbioses: Plant, Animal, and Microbe Interactions | Paper | Swift, Joel; Migicovsky, Zoë; Trello, Grace; Miller, Allison. | Grapevine
Microbiome
Microbiota
Grafting
Rootstock
Scion |
| SYM2002 | July 26th 10:30 am | Contrasting patterns of floral microbiome assembly in two clades of elemental hyperaccumulating plants | Symbioses: Plant, Animal, and Microbe Interactions | Paper | Cullen, Nevin; Ashman, Tia-Lynn. | Abiotic stress
Brassicaceae
Microbiome
community assembly
California Floristic Province
Heavy Metal |
| SYM2003 | July 26th 10:45 am | Impact of invasion by annual grasses on mycorrhizal inoculation potential in a grassland ecosystem | Symbioses: Plant, Animal, and Microbe Interactions | Paper | Sullivan, Alexis; Bunn, Rebecca; Cheeke, Tanya. | arbuscular mycorrhizal fungi
inocula
non-native species
native species
invasive species
grasslands
Palouse Prairie
restoration
plant-soil interactions |
| SYM2004 | July 26th 11:00 am | Repeated defoliation mediates growth and alters the composition of root-associated fungi in big bluestem (Andropogon gerardii) seedlings | Symbioses: Plant, Animal, and Microbe Interactions | Paper | Ellenwood, Jalynn; Johnson, Shaylee; Garcia-Kerboul, Marjorie; Helzer, Christopher; Pec, Gregory. | Andropogon gerardii
defoliation
root-associated fungal communities |
| SYM2005 | July 26th 11:15 am | Two shifts in evolutionary lability explain many independent origins of nitrogen-fixing nodulation symbiosis in angiosperms | Symbioses: Plant, Animal, and Microbe Interactions | Paper | Kates, Heather; Folk, Ryan; Guralnick, Robert; LaFrance, Raphael; O’Meara, Brian; Soltis, Douglas; Soltis, Pamela. | nitrogen-fixing plants
phylogenomics
nodulation
Symbiosis
nitrogen fixation |
| SYM2006 | July 26th 11:30 am | Uncultivated diversity of sulfur-cycling bacteria occurring in ecologically diverse vegetated salt marsh sediments | Symbioses: Plant, Animal, and Microbe Interactions | Paper | Peredo, Elena L; Pérez Castro, Sherlynette; Mason, Olivia; Vineis, Joe; Bowen, Jennifer; Mortazavi, Behzad; Ruff, Emil; Paul, Blair; Ganesh, Anakha; Giblin, Anne; Cardon, Zoe. | Symbiosis
Metagenomics
Gene diversity
Comparative -omics |
| SYM2007 | July 26th 11:45 am | Inter-continental comparisons reveal high endemism in orchid mycorrhizal fungal communities | Symbioses: Plant, Animal, and Microbe Interactions | Paper | Kaur, Jaspreet; Linde, Celeste; Jacquemyn, Hans; Sharma, Jyotsna. | Orchids
Orchid mycorrhizal fungi
distributions
continents |
|
| EO2001 | July 26th 1:30 pm | Addressing ecoliteracy needs for the 21st Century STEM workforce | Education and Outreach | Paper | Monfils, Anna; Prevost, Luanna; Mourad, Teresa; Linton, Debra. | Biodiversity Informatics
Education
ecology |
| EO2002 | July 26th 1:45 pm | A free-form assignment instead of an exam to stimulate students’ motivation and retention of botany knowledge | Education and Outreach | Paper | Erkens, Roy. | problem-based learning
motivation
self-directed learning
contextual learning
collaborative learning
constructive learning |
| EO2003 | July 26th 2:00 pm | Additional innovations in teaching a classic flora class asynchronously: virtual herbarium tour, quiz cabinets and taxon concepts | Education and Outreach | Paper | Ickert-Bond, Steffi; Zaborac-Reed, Stephanie; Webb, Campbell O. | flora class
taxon concept mapping
asynchronous delivery
ThinkLink
virtual herbarium tour |
| EO2004 | July 26th 2:15 pm | Using the Google Cloud Platform and Fungal Genomes to teach Undergraduate-Level Bioinformatics | Education and Outreach | Paper | Allen, Jessica. | genomics
Nanopore
Data analysis
Long read sequencing
Quantitative Literacy
Curriculum |
| EO2005 | July 26th 2:30 pm | A maceration technique for soft plant tissue without hazardous chemicals | Education and Outreach | Paper | Klahs, Phillip; McMurchie, Elizabeth; Nikkel, Jordan; Clark, Lynn. | Anatomy
methods
maceration
Education
microscopy
technique |
| EO2006 | July 26th 2:45 pm | Insights From a Course-based Undergraduate Research Experience on Florida Plants and Climate Change | Education and Outreach | Paper | Mabry, Makenzie; Soltis, Douglas; Soltis, Pamela. | CURE
Ecological niche model
Digitized Biocollections |
| EO2007 | July 26th 3:00 pm | Expanding access to course based undergraduate research with digital natural history collections | Education and Outreach | Paper | Johnson, Matthew; Bronson, Cecily; Krumm, Janice; Jordan, Carly. | CURE
Herbarium
museum
Curriculum
course design |
| July 26th 3:15 pm | Break | Education and Outreach | | | |
| EO2009 | July 26th 3:45 pm | The Greening of a Metabarcoding CURE Course | Education and Outreach | Paper | Baker, Stokes. | Undergraduate teaching
CURE
Course-based undergraduate research experience
Metabarcoding
Laboratory Course Assessment Survey
MinION
Long read sequencing |
| EO2010 | July 26th 4:00 pm | Plant Humanities Lab: A cross-discipline education resource | Education and Outreach | Paper | Krakos, Kyra Neipp; Ashley, Buchanan. | Education
cross cultural education
multi-discipline teaching
ethnobotany
plant humanities
botanical libraries |
| EO2011 | July 26th 4:15 pm | Growing potatoes (and other crops) on Mars: Piloting a collaboration and problem-solving assignment in an interdisciplinary "Science and Science Fiction" class | Education and Outreach | Paper | Soper Gorden, Nicole; Pierce, Joanna; Carter, Lucia; Cessna, Beth; Mickey, Shane; Spencer, Kelly. | Education
teaching
Interdisciplinary
Problem-solving
collaboration
Pedagogy |
| EO2012 | July 26th 4:30 pm | Meaningful Beauty: A collaborative, cross-disciplinary art exhibition that explores plant diversity and provides science communication opportunities for undergraduates | Education and Outreach | Paper | Clement, Wendy; Ault, Chris; Wright, Haley; King, Robert J; Welch, Shania; Bergen, Anna T; Kakumanu, Siya; Shah, Ria B.; Zhang, Jingbo; Howarth, Dianella; Srivastav, Mansa; Donoghue, Michael. | art exhibition
honeysuckle
Lonicera
collaboration
Undergraduate Research
PUI
Evolution
plant diversity
Science communication
outreach training
Outreach |
| EO2013 | July 26th 4:45 pm | Using WikiEdu platform as a class project in Botany courses | Education and Outreach | Paper | Burke, Janelle. | Taxonomy
wikipedia
species pages
Education |
| EO2014 | July 26th 5:00 pm | Building Biodiversity Datasets: A BLUE module teaching core biodiversity data skills | Education and Outreach | Paper | Hansen, Sara; Linton, Debra; Monfils, Anna. | |
| EO2015 | July 26th 5:15 pm | Two models for teaching online courses on plants and people | Education and Outreach | Paper | Pigg, Kathleen; Weaver-Bryant, Annie; Tuyisenge, Marie-Fidele; DeVore, Melanie. | cross cultural education
Online Education
Economic Botany |
Wednesday, July 27th |
|---|
|
| PHYLO II001 | July 27th 8:00 am | Phylogenomics and Evolution of Leaf Volatiles in the California Sages | Phylogenomics | Paper | Rose, Jeffrey; Heeg, Luciann; Kriebel, Ricardo; Codina, Audrey; Keefover-Ring, Ken; Sytsma, Kenneth; Drew, Bryan. | essential oil content
Lamiaceae
cytonuclear discordance
California Floristic Province
Salvia
Mediterranean climate |
| PHYLO II002 | July 27th 8:15 am | A bird’s eye view of the systematics of Convolvulaceae: novel insights from nuclear genomic data | Phylogenomics | Paper | Simões, Ana Rita; Eserman, Lauren; Zuntini, Alexandre R.; Chatrou, Lars; Utteridge, Timothy; Maurin, Olivier; Rokni, Saba; Roy, Shyamali; Forest, Felix; Baker, William; Stefanovic, Sasa. | Angiosperms353
Convolvulaceae
Cuscuta
phylogenomics
Ipomoea
Target Enrichment |
| PHYLO II003 | July 27th 8:30 am | Evidence of admixture among hyperdominant rainforest tree species in the Parvifolia clade of Eschweilera | Phylogenomics | Paper | Larson, Drew; Vargas, Oscar; Dick, Christopher. | phylogenomics
Lecythidaceae
Ericales
admixture
Neotropics
hybridization
introgression
Tropical biodiversity
targeted sequencing |
| PHYLO II004 | July 27th 8:45 am | Cyto-nuclear Discordance in Adenia | Phylogenomics | Paper | Netherland, Michael; Hearn, David. | phylogenomics
Species tree
cytonuclear discordance
introgression |
| PHYLO II005 | July 27th 9:00 am | Comparative Genomics and Phylogenetic Utility of the Mitochondrial Genome in Apiales | Phylogenomics | Paper | Nicolas, Antoine; Earl, Victoria; Hughes, Emily; Molina, Giselle; Scollan, Brianna; Zandel, Stephanie; Plunkett, Gregory. | mitogenome
Apiales
Hydrocotyle
Shotgun Sequencing |
| PHYLO II006 | July 27th 9:15 am | Effects of taxon sampling and shifts in mode of organellar inheritance on Gymnosperm phylogeny | Phylogenomics | Paper | Paradiso, Lydia. | gymnosperm
organelle inheritance
taxon sampling
Pinaceae |
| PHYLO II007 | July 27th 9:30 am | Dissecting the role of reticulate evolution in the diversification of Prunus (Rosaceae) | Phylogenomics | Paper | Hodel, Richard; Zimmer, Elizabeth; Liu, Bin-Bin; Johnson, Gabriel; Potter, Daniel; Wen, Jun. | allopolyploidy
hybridization
phylogenetic network
cytonuclear discord
Hyb-Seq
biogeography |
| July 27th 9:45 am | Break | Phylogenomics | | | |
| PHYLO II009 | July 27th 10:15 am | Boreotropical refugia and extensive introgressions explain the revival of north temperate diversity in the New World grapes | Phylogenomics | Paper | Nie, Zelong; Hodel, Richard; Ma, Zhiyao; Johnson, Gabriel; Ren, Chen; Meng, Ying; Ickert-Bond, Steffi; Liu, Xiu-Qun; Zimmer, Elizabeth; Wen, Jun. | Boreotropical refugia
New World grapes
temperate radiation
reticulate evolution
phylogenomics
biogeography
Vitis
Vitaceae |
| PHYLO II010 | July 27th 10:30 am | Patterns of Species Diversification in Geissorhiza (Iridaceae): Morphological and Habitat Traits Through Time | Phylogenomics | Paper | Eifler, Evan; Karimi, Nisa; Lemmon, Alan; Lemmon, Emily; Givnish, Thomas. | phylogenomics
Iridaceae
Diversification
molecular dating
Psammophory |
| PHYLO II011 | July 27th 10:45 am | A nuclear phylogenomic overview of Rosaceae | Phylogenomics | Paper | Stull, Gregory; Tian, Qin; Liu, Shui-Yin; Fu, Xiao-Gang; Kates, Heather; Folk, Ryan; Guralnick, Robert; Soltis, Pamela; Soltis, Douglas; Yi, Ting-Shuang. | hybridization
phylogenomics
polyploidy
Rosaceae
Rosales
whole genome duplication |
| PHYLO II012 | July 27th 11:00 am | Nuclear gene-based phylogenomic study resolves Poaceae phylogeny and provides insight to the evolution of C4 photosynthesis | Phylogenomics | Paper | Huang, Weichen; Zhang, Lin; Columbus, J. Travis; Hu, Yi; Zhao, Yiyong; Tang, Lin; Guo, Zhenhua; Chen, Wenli; McKain, Michael; Bartlett, Madelaine; Huang, Chien-Hsun; Li, De-zhu; Ge, Song; Ma, Hong. | Poaceae
transcriptome
phylogeny
nuclear gene
photosynthesis |
| PHYLO II013 | July 27th 11:15 am | Phylogenomics of Spanish irises, Iris subgenus Xiphium | Phylogenomics | Paper | Wilson, Carol. | biodiversity hotspot
Constraint trees
Iris
Iridaceae
mediterranean basin
missing data
nuclear genes
phylogenomics
plastomes
Strait of Gibraltar
targeted enrichment |
| PHYLO II014 | July 27th 11:30 am | A genome-wide approach for resolving phylogenetic relationships of subfamily Arbutoideae (Ericaceae) | Phylogenomics | Paper | Ramadoss, Niveditha; McElwee-Adame, Alexandra; Parker, V. T.; Gonzalez-Elizondo, Socorro; Litt, Amy; Flores-Renteria, Lluvia. | Arbutoideae
phylogenetics
Arbutus paraphyly |
| PHYLO II015 | July 27th 11:45 am | New Plastome Structural Rearrangements Discovered in Core Tillandsioideae (Bromeliaceae) Support recently adopted taxonomy | Phylogenomics | Paper | Díaz Contreras Díaz, Daniel David; Vera Paz, Sandra Itzel; Jost, Matthias; Wanke, Stefan; Rossado, Andrés; Hernández Gutiérrez, Rebeca; Salazar, Gerardo; Magallón, Susana; Gouda, Eric; Ramírez Morillo, Ivón; Donadío, Sabina; Granados Mendoza, Carolina. | Phylogenetic informativeness
Inverted repeats (IR)
Gene translocation
Inversions
Ancestral state reconstruction
Evolutionary rate shifts |
| PHYLO II016 | July 27th 12:00 pm | The Australian Angiosperm Tree of Life project | Phylogenomics | Paper | Allnutt, Theodore; Barrett, Matthew; Brown, Gillian; Crayn, Darren; Jackson, Chris; Lum, Mabel; McLay, Todd; Murphy, Daniel; Nargar, Katharina; Sauquet, Hervé; Schmidt-Lebuhn, Alexander; Shepherd, Kelly; Simpson, Lalita; Van Dijk, Korjent; Waycott, Michelle. | Australia
target-capture
phylogenomics
Angiosperms |
|
| PHYLO III001 | July 27th 1:30 pm | An updated phylogeny, biogeography, and PhyloCode-based classification of Cornaceae based on three sets of genomic data | Phylogenomics | Paper | Xiang, Qiuyun (Jenny); Du, Zhiyuan; Cheng, Jing; Zhou, Wenbin; Wang, Qing-Feng; Soltis, Douglas; Soltis, Pamela. | phylogenomics
RAD-Seq
Angiosperms353 Hyb-Seq
Cornaceae
Classification
Historical biogeography |
| PHYLO III002 | July 27th 1:45 pm | Phylogenetic analysis of Perennial Endemic North American (PENA) Clade of Apiaceae | Phylogenomics | Paper | Odufuwa, Phebian; Smith, James (Jim); Mansfield, Don; Feist, Mary Ann; Darrach, Mark. | phylogenetics
species delimitation
Generic boundaries delineation
Angiosperms353
Geophyte
Lomatium
endemic flora |
| PHYLO III003 | July 27th 2:00 pm | A Hyb-Seq phylogeny of Boechera (Brassicaceae) and related genera | Phylogenomics | Paper | Hay, Nikolai; Bailey, C. Donovan; Mandakova, Terezie; Hendriks, Kasper; Pryer, Kathleen; Windham, Michael. | Boechera
Hyb-Seq
phylogenetics
Brassicaceae |
| PHYLO III004 | July 27th 2:15 pm | A phylogenomic baseline to study the evolution of extreme floral curvature in Centropogon subgenus Centropogon (Campanulaceae) | Phylogenomics | Paper | Mansaray, Janet; Frost, Laura; Bedoya, Ana Maria; Lagomarsino, Laura. | |
| PHYLO III005 | July 27th 2:30 pm | Goldenrod herbariomics: Hybrid-sequence capture reveals the phylogeny of Solidago (Asteraceae) | Phylogenomics | Paper | Beck, James; McMinn-Sauder, Harper; Stover, Melissa; Lemmon, Alan; Lemmon, Emily; Semple, John. | Anchored Hybrid Enrichment
Chrysoma
herbarium specimens
North America
Solidago
phylogenomics
Oligoneuron
polyploidy |
| PHYLO III006 | July 27th 2:45 pm | Integrating phylogenomic and cytological evidence for the allopolyploid origin of Drosera anglica (Droseraceae) | Phylogenomics | Paper | Mohn, Rebekah; Yang, Ya. | polyploid
transcriptome
WGD
carnivorous plant
Caryophyllales |
| PHYLO III007 | July 27th 3:00 pm | Dissecting pollinator-driven floral-trait evolution in Agave subg. Manfreda | Phylogenomics | Paper | MacNeill, Bryan; McKain, Michael; Ruiz-Sanchez, Eduardo; Rodriguez Contreras, Aaron. | |
| July 27th 3:15 pm | Break | Phylogenomics | | | |
| PHYLO III009 | July 27th 3:45 pm | A phylogeny of the evening primrose family (Onagraceae) with a focus on tribe Onagreae using a target enrichment approach | Phylogenomics | Paper | Overson, Rick; Johnson, Matthew; Bechen, Lindsey; Kinosian, Sylvia; Douglas, Norman; Fant, Jeremie B; Hoch, Peter; Levin, Rachel; Moore, Michael; Raguso, Robert; Wagner, Warren; Skogen, Krissa; Wickett, Norman. | phylogenomics
HybSeq
Onagraceae
evening primrose
Target Enrichment
systematics
phylogenetics |
| PHYLO III010 | July 27th 4:00 pm | A phylogenomic study of Scutellaria (Lamiaceae) based on chloroplast genomes and 272 nuclear single-copy genes | Phylogenomics | Paper | Lee, Yoonkyung; Paton, Alan; Olmstead, Richard; Kim, Sangtae. | Scutellaria
Lamiaceae
Chlroplast genome
Nuclear genome
phylogenomics
Hyb-Seq |
| PHYLO III011 | July 27th 4:15 pm | Plastid phylogenomics of the Sansevieria Clade of Dracaena (Asparagaceae) resolves a recent radiation | Phylogenomics | Paper | Larridon, Isabel; van Kleinwee, Iris; Shah, Toral; Bauters, Kenneth; Asselman, Pieter; Goetghebeur, Paul; Leliaert, Frederik; Veltjen, Emily. | biogeography
convergent evolution
dated phylogeny
genome skimming
succulent plants |
| PHYLO III012 | July 27th 4:30 pm | Reference-free and bait-guided phylogenetic inference and species identification in the ginseng genus Panax (Araliaceae) using genome skim data | Phylogenomics | Paper | Literman, Robert; Fairbanks, Regina; Liu, Jing; Liu, Bin-Bin; Nie, Zelong; Ren, Chen; Johnson, Gabriel; Wen, Jun; Zimmer, Elizabeth; Hunter, Elizabeth; Handy, Sara. | Panax
ginseng
baits
genome skimming
phylogeny
species identification |
| PHYLO III013 | July 27th 4:45 pm | Resolving the reticulate evolutionary history of the New Zealand polyploid-rich genus Azorella (Apiaceae) | Phylogenomics | Paper | Ning, Weixuan; Meudt, Heidi; Nicolas, Antoine; Plunkett, Gregory; Lee, William; Tate, Jennifer. | Azorella
Apiaceae
hybridization
Hyb-Seq
whole-genome duplication
phylogenomics
Reticulation
genome skimming |
| PHYLO III014 | July 27th 5:00 pm | A First Plastome Phylogeny for Rumex L. (Polygonaceae), with Fossil-Aided Date Calibration | Phylogenomics | Paper | Koenemann, Daniel Mark; Kistler, Logan; Burke, Janelle. | RAxML
BEAST
Fossil Calibration
Cenozoic
Plastomics |
| PHYLO III015 | July 27th 5:15 pm | Rampant nuclear-mitochondrial-plastid phylogenomic discordance in globally distributed calcifying microalgae | Phylogenomics | Paper | Kao, Tzu-Tong; Wang, Tzu-Haw; Ku, Chuan. | coccolithophore
cytonuclear discordance
heteroplasmy
hybridization
inter-organellar discordance
organelle inheritance
marine phytoplankton
protist |
| PHYLO III016 | July 27th 5:30 pm | Incorporating Phased Alleles to Reconstruct a Recent and Rapid Radiation in Schiedea (Caryophyllaceae) | Phylogenomics | Paper | Loke, Elena; McDonnell, Angela; Moore, Michael; Sakai, Ann; Skogen, Krissa; Wagner, Warren; Weller, Stephen; Weisenberger, Lauren; Wickett, Norman. | Schiedea
Hawaiian Islands
HybSeq
Target Enrichment
Alleles
Incomplete Lineage Sorting
Carophyllaceae
Radiation |
