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Session | Date/Time | Location | Title | Type | Authors | Keywords |
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Monday, July 25th |
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PHYLO I001 | July 25th 8:00 am | Tubughnenq' 4/Dena'ina Center | Whom to trust when a microsynteny-based topology differs drastically from sequence-based phylogenies: the Juglandaceae as a test case | Oral Paper | Renner, Susanne S.; Bai, Wei-Ning; Zhang, Da-Yong. | Microsynteny Gene content allopolyploidy gene-content-based tree whole-genome duplication introgression |
PHYLO I002 | July 25th 8:15 am | Tubughnenq' 4/Dena'ina Center | Whom to trust wehn a microsynteny- and gene-content-based topology differs drastically from sequenced-based trees: Juglandaceae as a test case | Oral Paper | Renner, Susanne S.; Bai, Wei-Ning; Zhang, Da-Yong. | allopolyploidy DNA repair gene-content-based tree whole-genome duplication introgression |
PHYLO I003 | July 25th 8:30 am | Tubughnenq' 4/Dena'ina Center | Trait diversity – a novel phylodiversity measure to investigate eco-evolutionary mechanisms of community assembly | Oral Paper | Borokini, Israel; Allen, Julie; Smith, Stephen; Guralnick, Robert; Soltis, Pamela; Soltis, Douglas; Laffan, Shawn; Mishler, Brent. | trait diversity |
PHYLO I004 | July 25th 8:45 am | Tubughnenq' 4/Dena'ina Center | Untying Gordian knots: Unraveling reticulate polyploid plant evolution by RRS genomic data using a large non-model species complex | Oral Paper | Karbstein, Kevin; Tomasello, Salvatore; Hodac, Ladislav; Wagner, Natascha; Marincek, Pia; Barke, Birthe Hilkka; Pätzold, Claudia; Hörandl, Elvira. | allopolyploidy apomixis genome composition Hyb-Seq nuclear genes plastome data RAD-Seq Ranunculus auricomus |
PHYLO I005 | July 25th 9:00 am | Tubughnenq' 4/Dena'ina Center | Hybridization in Octoploid Fragaria | Oral Paper | Mortimer, Sebastian; Ashman, Tia-Lynn; Liston, Aaron. | WGS Fragaria hybridization |
PHYLO I006 | July 25th 9:15 am | Tubughnenq' 4/Dena'ina Center | Phylogenomic analyses based on nuclear and plasmid data yield novel insights into the reticulate evolution of Asarum (Aristolochiaceae) | Oral Paper | Zuo, Lei; Freudenstein, John. | Asarum reticulate evolution |
PHYLO I007 | July 25th 9:30 am | Tubughnenq' 4/Dena'ina Center | Differential role of climatic niche in colonization and in-situ evolutionary processes of Macaronesian ivies (Hedera L., Araliaceae) | Oral Paper | Gallego-Narbón, Angélica; Alonso Hernandez, Alejandro; Valcarcel, Virginia; Fernandez-Mazuecos Santa Teresa, Mario. | Hedera Macaronesia Climatic niche phylogenomics GBS |
| July 25th 9:45 am | Tubughnenq' 4/Dena'ina Center | Break | | | |
PHYLO I009 | July 25th 10:15 am | Tubughnenq' 4/Dena'ina Center | Reconstructing evolutionary relationships in the genus Packera (Asteraceae: Senecioneae) | Oral Paper | Moore, Erika; Mandel, Jennifer. | chloroplast nuclear genes paralogs phylogenomics polyploidy |
PHYLO I010 | July 25th 10:30 am | Tubughnenq' 4/Dena'ina Center | Red gold or corn silk? Detecting economic adulteration in the world’s most expensive spice: saffron | Oral Paper | Hunter, Elizabeth; Literman, Robert; Handy, Sara. | saffron genome skimming adulteration economic adulteration genomics |
PHYLO I011 | July 25th 10:45 am | Tubughnenq' 4/Dena'ina Center | Characterization of the entire USDA germplasm collection of Amaranthus | Oral Paper | Hoffberg, Sandra; Eaton, Deren. | RADseq crop collection |
PHYLO I012 | July 25th 11:00 am | Tubughnenq' 4/Dena'ina Center | Evolution of Asparagus: multiple origins of dioecy and sex chromosomes | Oral Paper | Bentz, Philip; Carey, Sarah; Harkess, Alex; Leebens-Mack, Jim. | comparative genomics asparagus asparagaceae Monocots Evolution Dioecy sex chromosomes sex-determination |
PHYLO I013 | July 25th 11:15 am | Tubughnenq' 4/Dena'ina Center | Completing the angiosperm tree of life - over half-way there | Oral Paper | Baker, William; PAFTOL, Team. | phylogenomics Angiosperms353 Open Access herbariomics target-capture Hyb-Seq Angiosperms tree of life |
PHYLO I014 | July 25th 11:30 am | Tubughnenq' 4/Dena'ina Center | A comprehensive phylogenomic tree of life sheds new light on angiosperm diversification | Oral Paper | Carruthers, Tom; Zuntini, Alexandre R.; Antonelli, Alexandre; Bellot, Sidonie; Crayn, Darren; Eiserhardt, Wolf L; Forest, Felix; Grace, Olwen; Smith, Stephen; Baker, William. | phylogenomics Angiosperms Angiosperms353 macroevolution Diversification |
PHYLO I015 | July 25th 11:45 am | Tubughnenq' 4/Dena'ina Center | Environment and geography drive diversification within the Amazon tree, Protium subserratum | Oral Paper | Misiewicz, Tracy. | Amazon speciation Ecological divergence soils Tropical biodiversity |
PHYLO I016 | July 25th 12:00 pm | Tubughnenq' 4/Dena'ina Center | Resolving taxonomic uncertainty and clarifying species boundaries in the Cymopterus terebinthinus species complex | Oral Paper | Taylor, Annie; Smith, James (Jim); Mansfield, Don; Feist, Mary Ann; Buerki, Sven; Darrach, Mark. | phylogenetics species delimitation Apiaceae Angiosperms353 species complex next generation sequencing |
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PPL001 | July 25th 5:30 pm | Idlughet (Eklutna) Exhibit Hall/Dena'ina Center | Ancient allopolyploidy, early radiation and extensive hybridization have shaped the evolutionary history of the Asian Palmate Group (Araliaceae) | Poster: Phylogenomics | Gallego-Narbón, Angélica; Wen, Jun; Valcarcel, Virginia. | Araliaceae phylogenomics hybridization Radiation ILS |
PPL002 | July 25th 5:30 pm | Idlughet (Eklutna) Exhibit Hall/Dena'ina Center | Complete chloroplast genomes of seven species of Elsholtzia (Lamiaceae): Comparative and phylogenetic analyses | Poster: Phylogenomics | Lee, Yoonkyung; Yun, Narae; Jeon, Yun-Chang; Choi, Sangho; Paik, Jin-Hyub. | Elsholtzia Lamiaceae Endemic Species Chloroplast genome phylogeny |
PPL003 | July 25th 5:30 pm | Idlughet (Eklutna) Exhibit Hall/Dena'ina Center | High-molecular-weight DNA extraction for sequencing plant genomes – an optimization of standard methods | Poster: Phylogenomics | Kang, Myeongbo; Chanderbali, Andre; Lee, Seungyeon; Soltis, Pamela; Soltis, Douglas; Kim, Sangtae. | DNA extraction genomic DNA high molecular weight DNA plant DNA |
PPL004 | July 25th 5:30 pm | Idlughet (Eklutna) Exhibit Hall/Dena'ina Center | Reticulate evolution as a potential driver of ecological niche adaptation in Quercus. | Poster: Phylogenomics | Landis, Henry; Roalson, Eric; Busch, Jeremiah. | quercus phylogenomics phylogenetics Reticulation adaptation niche evolution Evolution |
PPL005 | July 25th 5:30 pm | Idlughet (Eklutna) Exhibit Hall/Dena'ina Center | Evolutionary History of Caryophyllaceae Using DNA sequences | Poster: Phylogenomics | Rees, Riley J.; Schenk, John. | phylogeny Caryophyllaceae targeted sequencing Floral Development |
PPL006 | July 25th 5:30 pm | Idlughet (Eklutna) Exhibit Hall/Dena'ina Center | The true blueberries (Vaccinium sect. Cyanococcus) - A first complete phylogenomic hypothesis of diploid taxa and preliminary investigation into polyploids | Poster: Phylogenomics | Crowl, Andrew; Fritsch, Peter; Ashrafi, Hamid; Manos, Paul. | Alleles ericaceae HybSeq phylogenomics polyploidy Target Enrichment Vaccinium hybridization |
PPL007 | July 25th 5:30 pm | Idlughet (Eklutna) Exhibit Hall/Dena'ina Center | Identifying serpentine adaptation genes by tracing evolutionary-genomic history of Streptanthus, Caulanthus, and their allied genera (Brassicaceae) | Poster: Phylogenomics | Daundasekara, Kasuni; Garza, Elyssa; Pepper, Alan. | Brassicaceae Serpentine hybridization phylogenomics candidate genes |
PPL008 | July 25th 5:30 pm | Idlughet (Eklutna) Exhibit Hall/Dena'ina Center | Phylogenomics of willow (Salix L.) species in Alaska | Poster: Phylogenomics | Webb, Campbell O; Burleigh, J Gordon; Ickert-Bond, Steffi. | Salix L. willow molecular phylogenetics Classification GoFlag 408 |
PPL009 | July 25th 5:30 pm | Idlughet (Eklutna) Exhibit Hall/Dena'ina Center | Generation time differences amplify concatenation bias in phylogenetic inference | Poster: Phylogenomics | Au, Scarlet; McKenzie, Patrick; Eaton, Deren. | multispecies coalescent (MSC) concatenation generation times phylogenetic inference |
PPL010 | July 25th 5:30 pm | Idlughet (Eklutna) Exhibit Hall/Dena'ina Center | A tale of two Hyb-Seq probe sets: Comparing the Compositae-1061 probe set with a new probe set targeting 2424 functional genes | Poster: Phylogenomics | Gomez, Jorge; Moore, Erika; Burke, John; Mandel, Jennifer. | Asteraceae Compositae Hyb-Seq phylogeny candidate genes probe sets |
PPL011 | July 25th 5:30 pm | Idlughet (Eklutna) Exhibit Hall/Dena'ina Center | Evolution of nuclear ribosomal DNA in Asclepias (milkweeds): Patterns of intragenomic polymorphisms and copy number variation | Poster: Phylogenomics | Birkenholz, Jude; Fishbein, Mark; Straub, Shannon. | ribosomal DNA convergent evolution phylogenomics gene family |
Wednesday, July 27th |
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PHYLO II001 | July 27th 8:00 am | Tubughnenq' 4/Dena'ina Center | Phylogenomics and Evolution of Leaf Volatiles in the California Sages | Oral Paper | Rose, Jeffrey; Heeg, Luciann; Kriebel, Ricardo; Codina, Audrey; Keefover-Ring, Ken; Sytsma, Kenneth; Drew, Bryan. | essential oil content Lamiaceae cytonuclear discordance California Floristic Province Salvia Mediterranean climate |
PHYLO II002 | July 27th 8:15 am | Tubughnenq' 4/Dena'ina Center | A bird’s eye view of the systematics of Convolvulaceae: novel insights from nuclear genomic data | Oral Paper | Simões, Ana Rita; Eserman, Lauren; Zuntini, Alexandre R.; Chatrou, Lars; Utteridge, Timothy; Maurin, Olivier; Rokni, Saba; Roy, Shyamali; Forest, Felix; Baker, William; Stefanovic, Sasa. | Angiosperms353 Convolvulaceae Cuscuta phylogenomics Ipomoea Target Enrichment |
PHYLO II003 | July 27th 8:30 am | Tubughnenq' 4/Dena'ina Center | Evidence of admixture among hyperdominant rainforest tree species in the Parvifolia clade of Eschweilera | Oral Paper | Larson, Drew; Vargas, Oscar; Dick, Christopher. | phylogenomics Lecythidaceae Ericales admixture Neotropics hybridization introgression Tropical biodiversity targeted sequencing |
PHYLO II004 | July 27th 8:45 am | Tubughnenq' 4/Dena'ina Center | Cyto-nuclear Discordance in Adenia | Oral Paper | Netherland, Michael; Hearn, David. | phylogenomics Species tree cytonuclear discordance introgression |
PHYLO II005 | July 27th 9:00 am | Tubughnenq' 4/Dena'ina Center | Comparative Genomics and Phylogenetic Utility of the Mitochondrial Genome in Apiales | Oral Paper | Nicolas, Antoine; Earl, Victoria; Hughes, Emily; Molina, Giselle; Scollan, Brianna; Zandel, Stephanie; Plunkett, Gregory. | mitogenome Apiales Hydrocotyle Shotgun Sequencing |
PHYLO II006 | July 27th 9:15 am | Tubughnenq' 4/Dena'ina Center | Effects of taxon sampling and shifts in mode of organellar inheritance on Gymnosperm phylogeny | Oral Paper | Paradiso, Lydia. | gymnosperm organelle inheritance taxon sampling Pinaceae |
PHYLO II007 | July 27th 9:30 am | Tubughnenq' 4/Dena'ina Center | Dissecting the role of reticulate evolution in the diversification of Prunus (Rosaceae) | Oral Paper | Hodel, Richard; Zimmer, Elizabeth; Liu, Bin-Bin; Johnson, Gabriel; Potter, Daniel; Wen, Jun. | allopolyploidy hybridization phylogenetic network cytonuclear discord Hyb-Seq biogeography |
| July 27th 9:45 am | Tubughnenq' 4/Dena'ina Center | Break | | | |
PHYLO II009 | July 27th 10:15 am | Tubughnenq' 4/Dena'ina Center | Boreotropical refugia and extensive introgressions explain the revival of north temperate diversity in the New World grapes | Oral Paper | Nie, Zelong; Hodel, Richard; Ma, Zhiyao; Johnson, Gabriel; Ren, Chen; Meng, Ying; Ickert-Bond, Steffi; Liu, Xiu-Qun; Zimmer, Elizabeth; Wen, Jun. | Boreotropical refugia New World grapes temperate radiation reticulate evolution phylogenomics biogeography Vitis Vitaceae |
PHYLO II010 | July 27th 10:30 am | Tubughnenq' 4/Dena'ina Center | Patterns of Species Diversification in Geissorhiza (Iridaceae): Morphological and Habitat Traits Through Time | Oral Paper | Eifler, Evan; Karimi, Nisa; Lemmon, Alan; Lemmon, Emily; Givnish, Thomas. | phylogenomics Iridaceae Diversification molecular dating Psammophory |
PHYLO II011 | July 27th 10:45 am | Tubughnenq' 4/Dena'ina Center | A nuclear phylogenomic overview of Rosaceae | Oral Paper | Stull, Gregory; Tian, Qin; Liu, Shui-Yin; Fu, Xiao-Gang; Kates, Heather; Folk, Ryan; Guralnick, Robert; Soltis, Pamela; Soltis, Douglas; Yi, Ting-Shuang. | hybridization phylogenomics polyploidy Rosaceae Rosales whole genome duplication |
PHYLO II012 | July 27th 11:00 am | Tubughnenq' 4/Dena'ina Center | Nuclear gene-based phylogenomic study resolves Poaceae phylogeny and provides insight to the evolution of C4 photosynthesis | Oral Paper | Huang, Weichen; Zhang, Lin; Columbus, J. Travis; Hu, Yi; Zhao, Yiyong; Tang, Lin; Guo, Zhenhua; Chen, Wenli; McKain, Michael; Bartlett, Madelaine; Huang, Chien-Hsun; Li, De-zhu; Ge, Song; Ma, Hong. | Poaceae transcriptome phylogeny nuclear gene photosynthesis |
PHYLO II013 | July 27th 11:15 am | Tubughnenq' 4/Dena'ina Center | Phylogenomics of Spanish irises, Iris subgenus Xiphium | Oral Paper | Wilson, Carol. | biodiversity hotspot Constraint trees Iris Iridaceae mediterranean basin missing data nuclear genes phylogenomics plastomes Strait of Gibraltar targeted enrichment |
PHYLO II014 | July 27th 11:30 am | Tubughnenq' 4/Dena'ina Center | A genome-wide approach for resolving phylogenetic relationships of subfamily Arbutoideae (Ericaceae) | Oral Paper | Ramadoss, Niveditha; McElwee-Adame, Alexandra; Parker, V. T.; Gonzalez-Elizondo, Socorro; Litt, Amy; Flores-Renteria, Lluvia. | Arbutoideae phylogenetics Arbutus paraphyly |
PHYLO II015 | July 27th 11:45 am | Tubughnenq' 4/Dena'ina Center | New Plastome Structural Rearrangements Discovered in Core Tillandsioideae (Bromeliaceae) Support recently adopted taxonomy | Oral Paper | Díaz Contreras Díaz, Daniel David; Vera Paz, Sandra Itzel; Jost, Matthias; Wanke, Stefan; Rossado, Andrés; Hernández Gutiérrez, Rebeca; Salazar, Gerardo; Magallón, Susana; Gouda, Eric; Ramírez Morillo, Ivón; Donadío, Sabina; Granados Mendoza, Carolina. | Phylogenetic informativeness Inverted repeats (IR) Gene translocation Inversions Ancestral state reconstruction Evolutionary rate shifts |
PHYLO II016 | July 27th 12:00 pm | Tubughnenq' 4/Dena'ina Center | The Australian Angiosperm Tree of Life project | Oral Paper | Allnutt, Theodore; Barrett, Matthew; Brown, Gillian; Crayn, Darren; Jackson, Chris; Lum, Mabel; McLay, Todd; Murphy, Daniel; Nargar, Katharina; Sauquet, Hervé; Schmidt-Lebuhn, Alexander; Shepherd, Kelly; Simpson, Lalita; Van Dijk, Korjent; Waycott, Michelle. | Australia target-capture phylogenomics Angiosperms |
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PHYLO III001 | July 27th 1:30 pm | Tubughnenq' 4/Dena'ina Center | An updated phylogeny, biogeography, and PhyloCode-based classification of Cornaceae based on three sets of genomic data | Oral Paper | Xiang, Qiuyun (Jenny); Du, Zhiyuan; Cheng, Jing; Zhou, Wenbin; Wang, Qing-Feng; Soltis, Douglas; Soltis, Pamela. | phylogenomics RAD-Seq Angiosperms353 Hyb-Seq Cornaceae Classification Historical biogeography |
PHYLO III002 | July 27th 1:45 pm | Tubughnenq' 4/Dena'ina Center | Phylogenetic analysis of Perennial Endemic North American (PENA) Clade of Apiaceae | Oral Paper | Odufuwa, Phebian; Smith, James (Jim); Mansfield, Don; Feist, Mary Ann; Darrach, Mark. | phylogenetics species delimitation Generic boundaries delineation Angiosperms353 Geophyte Lomatium endemic flora |
PHYLO III003 | July 27th 2:00 pm | Tubughnenq' 4/Dena'ina Center | A Hyb-Seq phylogeny of Boechera (Brassicaceae) and related genera | Oral Paper | Hay, Nikolai; Bailey, C. Donovan; Mandakova, Terezie; Hendriks, Kasper; Pryer, Kathleen; Windham, Michael. | Boechera Hyb-Seq phylogenetics Brassicaceae |
PHYLO III004 | July 27th 2:15 pm | Tubughnenq' 4/Dena'ina Center | A phylogenomic baseline to study the evolution of extreme floral curvature in Centropogon subgenus Centropogon (Campanulaceae) | Oral Paper | Mansaray, Janet; Frost, Laura; Bedoya, Ana Maria; Lagomarsino, Laura. | |
PHYLO III005 | July 27th 2:30 pm | Tubughnenq' 4/Dena'ina Center | Goldenrod herbariomics: Hybrid-sequence capture reveals the phylogeny of Solidago (Asteraceae) | Oral Paper | Beck, James; McMinn-Sauder, Harper; Stover, Melissa; Lemmon, Alan; Lemmon, Emily; Semple, John. | Anchored Hybrid Enrichment Chrysoma herbarium specimens North America Solidago phylogenomics Oligoneuron polyploidy |
PHYLO III006 | July 27th 2:45 pm | Tubughnenq' 4/Dena'ina Center | Integrating phylogenomic and cytological evidence for the allopolyploid origin of Drosera anglica (Droseraceae) | Oral Paper | Mohn, Rebekah; Yang, Ya. | polyploid transcriptome WGD carnivorous plant Caryophyllales |
PHYLO III007 | July 27th 3:00 pm | Tubughnenq' 4/Dena'ina Center | Dissecting pollinator-driven floral-trait evolution in Agave subg. Manfreda | Oral Paper | MacNeill, Bryan; McKain, Michael; Ruiz-Sanchez, Eduardo; Rodriguez Contreras, Aaron. | |
| July 27th 3:15 pm | Tubughnenq' 4/Dena'ina Center | Break | | | |
PHYLO III009 | July 27th 3:45 pm | Tubughnenq' 4/Dena'ina Center | A phylogeny of the evening primrose family (Onagraceae) with a focus on tribe Onagreae using a target enrichment approach | Oral Paper | Overson, Rick; Johnson, Matthew; Bechen, Lindsey; Kinosian, Sylvia; Douglas, Norman; Fant, Jeremie B; Hoch, Peter; Levin, Rachel; Moore, Michael; Raguso, Robert; Wagner, Warren; Skogen, Krissa; Wickett, Norman. | phylogenomics HybSeq Onagraceae evening primrose Target Enrichment systematics phylogenetics |
PHYLO III010 | July 27th 4:00 pm | Tubughnenq' 4/Dena'ina Center | A phylogenomic study of Scutellaria (Lamiaceae) based on chloroplast genomes and 272 nuclear single-copy genes | Oral Paper | Lee, Yoonkyung; Paton, Alan; Olmstead, Richard; Kim, Sangtae. | Scutellaria Lamiaceae Chlroplast genome Nuclear genome phylogenomics Hyb-Seq |
PHYLO III011 | July 27th 4:15 pm | Tubughnenq' 4/Dena'ina Center | Plastid phylogenomics of the Sansevieria Clade of Dracaena (Asparagaceae) resolves a recent radiation | Oral Paper | Larridon, Isabel; van Kleinwee, Iris; Shah, Toral; Bauters, Kenneth; Asselman, Pieter; Goetghebeur, Paul; Leliaert, Frederik; Veltjen, Emily. | biogeography convergent evolution dated phylogeny genome skimming succulent plants |
PHYLO III012 | July 27th 4:30 pm | Tubughnenq' 4/Dena'ina Center | Reference-free and bait-guided phylogenetic inference and species identification in the ginseng genus Panax (Araliaceae) using genome skim data | Oral Paper | Literman, Robert; Fairbanks, Regina; Liu, Jing; Liu, Bin-Bin; Nie, Zelong; Ren, Chen; Johnson, Gabriel; Wen, Jun; Zimmer, Elizabeth; Hunter, Elizabeth; Handy, Sara. | Panax ginseng baits genome skimming phylogeny species identification |
PHYLO III013 | July 27th 4:45 pm | Tubughnenq' 4/Dena'ina Center | Resolving the reticulate evolutionary history of the New Zealand polyploid-rich genus Azorella (Apiaceae) | Oral Paper | Ning, Weixuan; Meudt, Heidi; Nicolas, Antoine; Plunkett, Gregory; Lee, William; Tate, Jennifer. | Azorella Apiaceae hybridization Hyb-Seq whole-genome duplication phylogenomics Reticulation genome skimming |
PHYLO III014 | July 27th 5:00 pm | Tubughnenq' 4/Dena'ina Center | A First Plastome Phylogeny for Rumex L. (Polygonaceae), with Fossil-Aided Date Calibration | Oral Paper | Koenemann, Daniel Mark; Kistler, Logan; Burke, Janelle. | RAxML BEAST Fossil Calibration Cenozoic Plastomics |
PHYLO III015 | July 27th 5:15 pm | Tubughnenq' 4/Dena'ina Center | Rampant nuclear-mitochondrial-plastid phylogenomic discordance in globally distributed calcifying microalgae | Oral Paper | Kao, Tzu-Tong; Wang, Tzu-Haw; Ku, Chuan. | coccolithophore cytonuclear discordance heteroplasmy hybridization inter-organellar discordance organelle inheritance marine phytoplankton protist |
PHYLO III016 | July 27th 5:30 pm | Tubughnenq' 4/Dena'ina Center | Incorporating Phased Alleles to Reconstruct a Recent and Rapid Radiation in Schiedea (Caryophyllaceae) | Oral Paper | Loke, Elena; McDonnell, Angela; Moore, Michael; Sakai, Ann; Skogen, Krissa; Wagner, Warren; Weller, Stephen; Weisenberger, Lauren; Wickett, Norman. | Schiedea Hawaiian Islands HybSeq Target Enrichment Alleles Incomplete Lineage Sorting Carophyllaceae Radiation |