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Sessions for Room: Tubughnenq' 4/Dena'ina Center

Click on the Abstract you would like to read.

SessionDate/TimeTitleSection/TopicTypeAuthorsKeywords

Sunday, July 24th

Sunday, July 24th
9:00 am to 12:00 pm · Tubughnenq' 4/Dena'ina Center
Session W11: Workshop: Developing CRISPR systems in non-genetic plant models: from plasmid design to transgenic plant
Presiding: Shengchen Shan, Florida Museum of Natural History; Douglas Soltis, University Of Florida; Pamela Soltis, University Of Florida; Bing Yang, University of Missouri; W. Brad Barbazuk,
July 24th 9:00 amDeveloping CRISPR systems in non-genetic plant models: from plasmid design to transgenic plantConference Wide
Sunday, July 24th
1:00 pm to 5:00 pm · Tubughnenq' 4/Dena'ina Center
Session W21: Workshop: The Promises and Perils of Pigments Part 2: Quantifying Flower Color Across Scales
Presiding: Justen Whittall, Santa Clara University
W21001July 24th 1:00 pmThe Promises and Perils of Pigments Part2: Quantifying Flower Color Across Scales (Part 1 was presented at Botany 2021)Conference WideWorkshopWhittall, Justen; Narbona, Eduardo; del Valle, Jose Carlos; Berardi, Andrea.

Monday, July 25th

Monday, July 25th
8:00 am to 12:15 pm · Tubughnenq' 4/Dena'ina Center
Session PHYLO I: Contributed Papers: Phylogenomics I
Presiding: Susanne S. Renner, ; Israel Borokini, University Of California, Berkeley
PHYLO I001July 25th 8:00 amWhom to trust when a microsynteny-based topology differs drastically from sequence-based phylogenies: the Juglandaceae as a test casePhylogenomicsPaperRenner, Susanne S.; Bai, Wei-Ning; Zhang, Da-Yong.Microsynteny
Gene content
allopolyploidy
gene-content-based tree
whole-genome duplication
introgression
PHYLO I002July 25th 8:15 amWhom to trust wehn a microsynteny- and gene-content-based topology differs drastically from sequenced-based trees: Juglandaceae as a test casePhylogenomicsPaperRenner, Susanne S.; Bai, Wei-Ning; Zhang, Da-Yong.allopolyploidy
DNA repair
gene-content-based tree
whole-genome duplication
introgression
PHYLO I003July 25th 8:30 amTrait diversity – a novel phylodiversity measure to investigate eco-evolutionary mechanisms of community assemblyPhylogenomicsPaperBorokini, Israel; Allen, Julie; Smith, Stephen; Guralnick, Robert; Soltis, Pamela; Soltis, Douglas; Laffan, Shawn; Mishler, Brent.trait diversity
PHYLO I004July 25th 8:45 amUntying Gordian knots: Unraveling reticulate polyploid plant evolution by RRS genomic data using a large non-model species complexPhylogenomicsPaperKarbstein, Kevin; Tomasello, Salvatore; Hodac, Ladislav; Wagner, Natascha; Marincek, Pia; Barke, Birthe Hilkka; Pätzold, Claudia; Hörandl, Elvira.allopolyploidy
apomixis
genome composition
Hyb-Seq
nuclear genes
plastome data
RAD-Seq
Ranunculus auricomus
PHYLO I005July 25th 9:00 amHybridization in Octoploid FragariaPhylogenomicsPaperMortimer, Sebastian; Ashman, Tia-Lynn; Liston, Aaron.WGS
Fragaria
hybridization
PHYLO I006July 25th 9:15 amPhylogenomic analyses based on nuclear and plasmid data yield novel insights into the reticulate evolution of Asarum (Aristolochiaceae)PhylogenomicsPaperZuo, Lei; Freudenstein, John.Asarum
reticulate evolution
PHYLO I007July 25th 9:30 amDifferential role of climatic niche in colonization and in-situ evolutionary processes of Macaronesian ivies (Hedera L., Araliaceae)PhylogenomicsPaperGallego-Narbón, Angélica; Alonso Hernandez, Alejandro; Valcarcel, Virginia; Fernandez-Mazuecos Santa Teresa, Mario.Hedera
Macaronesia
Climatic niche
phylogenomics
GBS
July 25th 9:45 amBreakPhylogenomics
PHYLO I009July 25th 10:15 amReconstructing evolutionary relationships in the genus Packera (Asteraceae: Senecioneae)PhylogenomicsPaperMoore, Erika; Mandel, Jennifer.chloroplast
nuclear genes
paralogs
phylogenomics
polyploidy
PHYLO I010July 25th 10:30 amRed gold or corn silk? Detecting economic adulteration in the world’s most expensive spice: saffronPhylogenomicsPaperHunter, Elizabeth; Literman, Robert; Handy, Sara.saffron
genome skimming
adulteration
economic adulteration
genomics
PHYLO I011July 25th 10:45 amCharacterization of the entire USDA germplasm collection of AmaranthusPhylogenomicsPaperHoffberg, Sandra; Eaton, Deren.RADseq
crop
collection
PHYLO I012July 25th 11:00 amEvolution of Asparagus: multiple origins of dioecy and sex chromosomesPhylogenomicsPaperBentz, Philip; Carey, Sarah; Harkess, Alex; Leebens-Mack, Jim.comparative genomics
asparagus
asparagaceae
Monocots
Evolution
Dioecy
sex chromosomes
sex-determination
PHYLO I013July 25th 11:15 amCompleting the angiosperm tree of life - over half-way therePhylogenomicsPaperBaker, William; PAFTOL, Team.phylogenomics
Angiosperms353
Open Access
herbariomics
target-capture
Hyb-Seq
Angiosperms
tree of life
PHYLO I014July 25th 11:30 amA comprehensive phylogenomic tree of life sheds new light on angiosperm diversificationPhylogenomicsPaperCarruthers, Tom; Zuntini, Alexandre R.; Antonelli, Alexandre; Bellot, Sidonie; Crayn, Darren; Eiserhardt, Wolf L; Forest, Felix; Grace, Olwen; Smith, Stephen; Baker, William.phylogenomics
Angiosperms
Angiosperms353
macroevolution
Diversification
PHYLO I015July 25th 11:45 amEnvironment and geography drive diversification within the Amazon tree, Protium subserratumPhylogenomicsPaperMisiewicz, Tracy.Amazon
speciation
Ecological divergence
soils
Tropical biodiversity
PHYLO I016July 25th 12:00 pmResolving taxonomic uncertainty and clarifying species boundaries in the Cymopterus terebinthinus species complexPhylogenomicsPaperTaylor, Annie; Smith, James (Jim); Mansfield, Don; Feist, Mary Ann; Buerki, Sven; Darrach, Mark.phylogenetics
species delimitation
Apiaceae
Angiosperms353
species complex
next generation sequencing
Monday, July 25th
1:30 pm to 5:15 pm · Tubughnenq' 4/Dena'ina Center
Session BIOG I: Contributed Papers: Biogeography I
Presiding: Kenneth Cameron, University Of Wisconsin; Julissa Roncal, Memorial University Of Newfoundland
BIOG I001July 25th 1:30 pmHistorical biogeography of Caribbean endemic plants: insight from dated phylogenetic trees contributes to paleogeography of the regionBiogeographyPaperRoncal, Julissa; Nieto-Blazquez, Maria Esther; Cardona, Agustin; Bacon, Christine.colonization
divergence time
endemic flora
GAARlandia
in situ speciation
time-for-speciation
vicariance
West Indies
BIOG I002July 25th 1:45 pmGreenMaps: a Tool for Addressing the Wallacean Shortfall in the Global Distribution of PlantsBiogeographyPaperDaru, Barnabas.Citizen Science
Plant Biogeography
Species Distribution Modeling
Vascular Plants
BIOG I003July 25th 2:00 pmAddressing Darwin’s naturalization conundrum using native and naturalized species using disjunct genera that occur in Eastern North America and Eastern AsiaBiogeographyPaperLiu, Yunpeng; Heberling, Mason; Wang, Zhiheng; Soltis, Douglas; Soltis, Pamela.Eastern Asia – Eastern North America floristic disjunction
Plant invasion
Naturalization
Preadaptation
Climatic niches
BIOG I004July 25th 2:15 pmPhylogeography of Streptopus lanceolatus (Liliaceae): a North American endemic with a curious pattern of disjunction among the Pacific Northwest, Upper Midwest, and Eastern AppalachiaBiogeographyPaperCameron, Kenneth; Wang, Shenyi.Glaciation
Monocots
Liliales
Regugia
GBS
Driftless Area
Phylogeography
BIOG I005July 25th 2:30 pmSpecies delimitation at marginal areas: Range expansion of the apomictic polyploid Ranunculus auricomus complex following the Last Glacial MaximumBiogeographyPaperBradican, John Paul; Karbstein, Kevin; Tomasello, Salvatore; Dunkel, Franz; Pätzold, Claudia; Hodač, Ladislav; Hörandl, Elvira.biogeography
polyploidy
Ranunculus auricomus
Target Enrichment
apomixis
arctic
Subarctic
BIOG I006July 25th 2:45 pmEffects of climatic fluctuations and restricted gene flow on the fragmented distribution pattern of Tertiary relict conifer Pseudotaxus chienii (Taxaceae) revealed by chloroplast and nuclear markersBiogeographyPaperLi, Ning; Su, Yingjuan; Wang, Ting.Pseudotaxus chienii
Phylogeography
ecological niche modelling
climatic fluctuations
gene flow
fragmented distribution pattern
July 25th 3:00 pmBreakBiogeography
BIOG I008July 25th 3:45 pm
Canceled
The mystery of North American shrub birches: from researchers to detectives
BiogeographyPaperTouchette, Lyne; Godbout, Julie; Lamothe, Manuel; Isabel, Nathalie; Porth, Ilga.Betula glandulosa
genomics
biogeography
shrub
North American birches
nuclear DNA
chloroplast DNA
ploidy level
BIOG I009July 25th 4:00 pm
Canceled
Climate and geographic distance drive phylogenetic regionalization in the world's tree flora
BiogeographyPaperMonks, Logan; Davies, Stuart; Swenson, Nathan.Trees
forests
Phylogenetic beta-diversity
Biogeographic regions
BIOG I010July 25th 4:15 pmUnderstanding Phylogenetic Diversity and Endemism in the Greater Antilles: Caribbean Melastomes as a Case Test ExampleBiogeographyPaperNaranjo, Andre; Majure, Lucas.Melastomes
phylogenetic diversity
endemism
CANAPE
Greater Antilles
BIOG I011July 25th 4:30 pmAreas of Endemism of Plants in Southcentral and Southwestern Nearctic RegionBiogeographyPaperSaghatelyan, Anna.areas of endemism
biogeographic patterns
Madrean
SW Deserts
regionalization
BIOG I012July 25th 4:45 pmUncovering the biogeographic history of the Neotropical Tillandsia subgenus TillandsiaBiogeographyPaperVera Paz, Sandra Itzel; Díaz Contreras Díaz, D. D; Montes-Azcue, Claudia; Jost, Matthias; Hernández-Gutiérrez, Rebeca; Magallon, Susana; Sánchez Gonzáles, Luis Antonio; Salazar, Gerardo; Wanke, Stefan; Granados Mendoza, Carolina.Tillandsia
plastome
Neotropics
BIOG I013July 25th 5:00 pmExamining broad geographic patterns of Rhodohypoxis baurii (Baker) Nel. var. platypetala Hilliard & Burtt cytotypes in the Drakensberg, South AfricaBiogeographyPaperMtileni, Masingitla; Glennon, Kelsey.Hypoxidaceae
Mountain grasslands endemic
Environmental distribution
polyploidy

Tuesday, July 26th

Tuesday, July 26th
8:00 am to 9:45 am · Tubughnenq' 4/Dena'ina Center
Session SYM1: Contributed Papers: Symbioses: Plant, Animal, and Microbe Interaction 1
Presiding: Jessica Allen, Eastern Washington University; John Freudenstein, The Ohio State University
SYM1001July 26th 8:00 amThe physiology of phylloplane pH regulation and its consequences on the microbiomeSymbioses: Plant, Animal, and Microbe InteractionsPaperGilbert, Kadeem; Renner, Tanya.phylloplane pH
Gossypium
Nepenthes
Beta vulgaris
Transcriptomics
metatranscriptomics
SYM1002July 26th 8:15 amDiversity of plants foraged by two solitary wild beesSymbioses: Plant, Animal, and Microbe InteractionsPaperPuppo, Pamela; Martins, Filipa; Thompson, Madeline; Ferguson, Beth; Rinehart, Joseph; Bowsher, Julia; Greenlee, Kendra; Prasifka, Jarrad.Pollination
Crops
sunflower
alfalfa
Bees
SYM1003July 26th 8:30 amA Call To Reconceptualize Lichen SymbiosesSymbioses: Plant, Animal, and Microbe InteractionsPaperAllen, Jessica; Lendemer, James.
SYM1004July 26th 8:45 amCorallorhiza striata is a “double parasite” and the first case of sexually deceptive pollination known among North American orchidsSymbioses: Plant, Animal, and Microbe InteractionsPaperFreudenstein, John; Barrett, Craig.parasitism
Orchidaceae
Pollination
SYM1005July 26th 9:00 amThe Inside Story: Microbes Living Within Plant TissuesSymbioses: Plant, Animal, and Microbe InteractionsPaperMartínez Hidalgo, María Pilar; Khan, Noor; HUMM, ETHAN; JAYAKARUNAKARAN, AKSHAYA; Hirsch, Ann.nodule microbiome
alfalfa
Plant growth-promoting bacteria
SYM1006July 26th 9:15 amForaging behavior of Indian honeybee: Are bees specialists at an individual level?Symbioses: Plant, Animal, and Microbe InteractionsPaperDandavate, Rohan; S, Sandhya; Shrotri, Saket; Kaur, Sukhraj; Gowda, Vinita.Apis cerana indica
Floral Constancy
pollen
Tuesday, July 26th
10:15 am to 12:00 pm · Tubughnenq' 4/Dena'ina Center
Session SYM2: Contributed Papers: Symbioses: Plant, Animal, and Microbe Interactions 2
Presiding: Alexis Sullivan, Washington State University; Gregory Pec,
SYM2001July 26th 10:15 amGrafted grapevine microbiota varies across space, time, and scion/rootstock combinationsSymbioses: Plant, Animal, and Microbe InteractionsPaperSwift, Joel; Migicovsky, Zoë; Trello, Grace; Miller, Allison.Grapevine
Microbiome
Microbiota
Grafting
Rootstock
Scion
SYM2002July 26th 10:30 amContrasting patterns of floral microbiome assembly in two clades of elemental hyperaccumulating plantsSymbioses: Plant, Animal, and Microbe InteractionsPaperCullen, Nevin; Ashman, Tia-Lynn.Abiotic stress
Brassicaceae
Microbiome
community assembly
California Floristic Province
Heavy Metal
SYM2003July 26th 10:45 amImpact of invasion by annual grasses on mycorrhizal inoculation potential in a grassland ecosystemSymbioses: Plant, Animal, and Microbe InteractionsPaperSullivan, Alexis; Bunn, Rebecca; Cheeke, Tanya.arbuscular mycorrhizal fungi
inocula
non-native species
native species
invasive species
grasslands
Palouse Prairie
restoration
plant-soil interactions
SYM2004July 26th 11:00 amRepeated defoliation mediates growth and alters the composition of root-associated fungi in big bluestem (Andropogon gerardii) seedlingsSymbioses: Plant, Animal, and Microbe InteractionsPaperEllenwood, Jalynn; Johnson, Shaylee; Garcia-Kerboul, Marjorie; Helzer, Christopher; Pec, Gregory.Andropogon gerardii
defoliation
root-associated fungal communities
SYM2005July 26th 11:15 amTwo shifts in evolutionary lability explain many independent origins of nitrogen-fixing nodulation symbiosis in angiospermsSymbioses: Plant, Animal, and Microbe InteractionsPaperKates, Heather; Folk, Ryan; Guralnick, Robert; LaFrance, Raphael; O’Meara, Brian; Soltis, Douglas; Soltis, Pamela.nitrogen-fixing plants
phylogenomics
nodulation
Symbiosis
nitrogen fixation
SYM2006July 26th 11:30 amUncultivated diversity of sulfur-cycling bacteria occurring in ecologically diverse vegetated salt marsh sedimentsSymbioses: Plant, Animal, and Microbe InteractionsPaperPeredo, Elena L; Pérez Castro, Sherlynette; Mason, Olivia; Vineis, Joe; Bowen, Jennifer; Mortazavi, Behzad; Ruff, Emil; Paul, Blair; Ganesh, Anakha; Giblin, Anne; Cardon, Zoe.Symbiosis
Metagenomics
Gene diversity
Comparative -omics
SYM2007July 26th 11:45 amInter-continental comparisons reveal high endemism in orchid mycorrhizal fungal communitiesSymbioses: Plant, Animal, and Microbe InteractionsPaperKaur, Jaspreet; Linde, Celeste; Jacquemyn, Hans; Sharma, Jyotsna.Orchids
Orchid mycorrhizal fungi
distributions
continents
Tuesday, July 26th
1:30 pm to 5:30 pm · Tubughnenq' 4/Dena'ina Center
Session EO2: Contributed Papers: Teaching Section: Assignments, Lab & Projects
Presiding: Stokes Baker, University of Detroit Mercy; Kyra N. Krakos, Maryville University
EO2001July 26th 1:30 pmAddressing ecoliteracy needs for the 21st Century STEM workforceEducation and Outreach PaperMonfils, Anna; Prevost, Luanna; Mourad, Teresa; Linton, Debra.Biodiversity Informatics
Education
ecology
EO2002July 26th 1:45 pmA free-form assignment instead of an exam to stimulate students’ motivation and retention of botany knowledgeEducation and Outreach PaperErkens, Roy.problem-based learning
motivation
self-directed learning
contextual learning
collaborative learning
constructive learning
EO2003July 26th 2:00 pmAdditional innovations in teaching a classic flora class asynchronously: virtual herbarium tour, quiz cabinets and taxon conceptsEducation and Outreach PaperIckert-Bond, Steffi; Zaborac-Reed, Stephanie; Webb, Campbell O.flora class
taxon concept mapping
asynchronous delivery
ThinkLink
virtual herbarium tour 
EO2004July 26th 2:15 pmUsing the Google Cloud Platform and Fungal Genomes to teach Undergraduate-Level BioinformaticsEducation and Outreach PaperAllen, Jessica.genomics
Nanopore
Data analysis
Long read sequencing
Quantitative Literacy
Curriculum
EO2005July 26th 2:30 pmA maceration technique for soft plant tissue without hazardous chemicalsEducation and Outreach PaperKlahs, Phillip; McMurchie, Elizabeth; Nikkel, Jordan; Clark, Lynn.Anatomy
methods
maceration
Education
microscopy
technique
EO2006July 26th 2:45 pmInsights From a Course-based Undergraduate Research Experience on Florida Plants and Climate ChangeEducation and Outreach PaperMabry, Makenzie; Soltis, Douglas; Soltis, Pamela.CURE
Ecological niche model
Digitized Biocollections
EO2007July 26th 3:00 pmExpanding access to course based undergraduate research with digital natural history collectionsEducation and Outreach PaperJohnson, Matthew; Bronson, Cecily; Krumm, Janice; Jordan, Carly.CURE
Herbarium
museum
Curriculum
course design
July 26th 3:15 pmBreakEducation and Outreach
EO2009July 26th 3:45 pmThe Greening of a Metabarcoding CURE CourseEducation and Outreach PaperBaker, Stokes.Undergraduate teaching
CURE
Course-based undergraduate research experience 
Metabarcoding
Laboratory Course Assessment Survey 
MinION
Long read sequencing
EO2010July 26th 4:00 pmPlant Humanities Lab: A cross-discipline education resourceEducation and Outreach PaperKrakos, Kyra Neipp; Ashley, Buchanan.Education
cross cultural education
multi-discipline teaching
ethnobotany
plant humanities
botanical libraries
EO2011July 26th 4:15 pmGrowing potatoes (and other crops) on Mars: Piloting a collaboration and problem-solving assignment in an interdisciplinary "Science and Science Fiction" classEducation and Outreach PaperSoper Gorden, Nicole; Pierce, Joanna; Carter, Lucia; Cessna, Beth; Mickey, Shane; Spencer, Kelly.Education
teaching
Interdisciplinary
Problem-solving
collaboration
Pedagogy
EO2012July 26th 4:30 pmMeaningful Beauty: A collaborative, cross-disciplinary art exhibition that explores plant diversity and provides science communication opportunities for undergraduatesEducation and Outreach PaperClement, Wendy; Ault, Chris; Wright, Haley; King, Robert J; Welch, Shania; Bergen, Anna T; Kakumanu, Siya; Shah, Ria B.; Zhang, Jingbo; Howarth, Dianella; Srivastav, Mansa; Donoghue, Michael.art exhibition
honeysuckle
Lonicera
collaboration
Undergraduate Research
PUI
Evolution
plant diversity
Science communication
outreach training
Outreach
EO2013July 26th 4:45 pmUsing WikiEdu platform as a class project in Botany coursesEducation and Outreach PaperBurke, Janelle.Taxonomy 
wikipedia
species pages
Education
EO2014July 26th 5:00 pmBuilding Biodiversity Datasets: A BLUE module teaching core biodiversity data skillsEducation and Outreach PaperHansen, Sara; Linton, Debra; Monfils, Anna.
EO2015July 26th 5:15 pmTwo models for teaching online courses on plants and peopleEducation and Outreach PaperPigg, Kathleen; Weaver-Bryant, Annie; Tuyisenge, Marie-Fidele; DeVore, Melanie.cross cultural education
Online Education
Economic Botany

Wednesday, July 27th

Wednesday, July 27th
8:00 am to 12:15 pm · Tubughnenq' 4/Dena'ina Center
Session PHYLO II: Contributed Papers: Phylogenomics II
Presiding: Carol Wilson, University Of California, Berkeley; Jeffrey Rose, University Of Wisconsin
PHYLO II001July 27th 8:00 amPhylogenomics and Evolution of Leaf Volatiles in the California SagesPhylogenomicsPaperRose, Jeffrey; Heeg, Luciann; Kriebel, Ricardo; Codina, Audrey; Keefover-Ring, Ken; Sytsma, Kenneth; Drew, Bryan.essential oil content
Lamiaceae
cytonuclear discordance
California Floristic Province
Salvia
Mediterranean climate
PHYLO II002July 27th 8:15 amA bird’s eye view of the systematics of Convolvulaceae: novel insights from nuclear genomic dataPhylogenomicsPaperSimões, Ana Rita; Eserman, Lauren; Zuntini, Alexandre R.; Chatrou, Lars; Utteridge, Timothy; Maurin, Olivier; Rokni, Saba; Roy, Shyamali; Forest, Felix; Baker, William; Stefanovic, Sasa.Angiosperms353
Convolvulaceae
Cuscuta
phylogenomics
Ipomoea
Target Enrichment
PHYLO II003July 27th 8:30 amEvidence of admixture among hyperdominant rainforest tree species in the Parvifolia clade of EschweileraPhylogenomicsPaperLarson, Drew; Vargas, Oscar; Dick, Christopher.phylogenomics
Lecythidaceae
Ericales
admixture
Neotropics
hybridization
introgression
Tropical biodiversity
targeted sequencing
PHYLO II004July 27th 8:45 amCyto-nuclear Discordance in AdeniaPhylogenomicsPaperNetherland, Michael; Hearn, David.phylogenomics
Species tree
cytonuclear discordance
introgression
PHYLO II005July 27th 9:00 amComparative Genomics and Phylogenetic Utility of the Mitochondrial Genome in ApialesPhylogenomicsPaperNicolas, Antoine; Earl, Victoria; Hughes, Emily; Molina, Giselle; Scollan, Brianna; Zandel, Stephanie; Plunkett, Gregory.mitogenome
Apiales
Hydrocotyle
Shotgun Sequencing
PHYLO II006July 27th 9:15 amEffects of taxon sampling and shifts in mode of organellar inheritance on Gymnosperm phylogenyPhylogenomicsPaperParadiso, Lydia.gymnosperm
organelle inheritance
taxon sampling
Pinaceae
PHYLO II007July 27th 9:30 amDissecting the role of reticulate evolution in the diversification of Prunus (Rosaceae)PhylogenomicsPaperHodel, Richard; Zimmer, Elizabeth; Liu, Bin-Bin; Johnson, Gabriel; Potter, Daniel; Wen, Jun.allopolyploidy
hybridization
phylogenetic network
cytonuclear discord
Hyb-Seq
biogeography
July 27th 9:45 amBreakPhylogenomics
PHYLO II009July 27th 10:15 amBoreotropical refugia and extensive introgressions explain the revival of north temperate diversity in the New World grapesPhylogenomicsPaperNie, Zelong; Hodel, Richard; Ma, Zhiyao; Johnson, Gabriel; Ren, Chen; Meng, Ying; Ickert-Bond, Steffi; Liu, Xiu-Qun; Zimmer, Elizabeth; Wen, Jun.Boreotropical refugia
New World grapes
temperate radiation
reticulate evolution
phylogenomics
biogeography
Vitis
Vitaceae
PHYLO II010July 27th 10:30 amPatterns of Species Diversification in Geissorhiza (Iridaceae): Morphological and Habitat Traits Through TimePhylogenomicsPaperEifler, Evan; Karimi, Nisa; Lemmon, Alan; Lemmon, Emily; Givnish, Thomas.phylogenomics
Iridaceae
Diversification
molecular dating
Psammophory
PHYLO II011July 27th 10:45 amA nuclear phylogenomic overview of RosaceaePhylogenomicsPaperStull, Gregory; Tian, Qin; Liu, Shui-Yin; Fu, Xiao-Gang; Kates, Heather; Folk, Ryan; Guralnick, Robert; Soltis, Pamela; Soltis, Douglas; Yi, Ting-Shuang.hybridization
phylogenomics
polyploidy
Rosaceae
Rosales
whole genome duplication
PHYLO II012July 27th 11:00 amNuclear gene-based phylogenomic study resolves Poaceae phylogeny and provides insight to the evolution of C4 photosynthesisPhylogenomicsPaperHuang, Weichen; Zhang, Lin; Columbus, J. Travis; Hu, Yi; Zhao, Yiyong; Tang, Lin; Guo, Zhenhua; Chen, Wenli; McKain, Michael; Bartlett, Madelaine; Huang, Chien-Hsun; Li, De-zhu; Ge, Song; Ma, Hong.Poaceae
transcriptome
phylogeny
nuclear gene
photosynthesis
PHYLO II013July 27th 11:15 amPhylogenomics of Spanish irises, Iris subgenus XiphiumPhylogenomicsPaperWilson, Carol.biodiversity hotspot
Constraint trees
Iris
Iridaceae
mediterranean basin
missing data
nuclear genes
phylogenomics
plastomes
Strait of Gibraltar
targeted enrichment
PHYLO II014July 27th 11:30 amA genome-wide approach for resolving phylogenetic relationships of subfamily Arbutoideae (Ericaceae)PhylogenomicsPaperRamadoss, Niveditha; McElwee-Adame, Alexandra; Parker, V. T.; Gonzalez-Elizondo, Socorro; Litt, Amy; Flores-Renteria, Lluvia.Arbutoideae 
phylogenetics
Arbutus paraphyly
PHYLO II015July 27th 11:45 amNew Plastome Structural Rearrangements Discovered in Core Tillandsioideae (Bromeliaceae) Support recently adopted taxonomyPhylogenomicsPaperDíaz Contreras Díaz, Daniel David; Vera Paz, Sandra Itzel; Jost, Matthias; Wanke, Stefan; Rossado, Andrés; Hernández Gutiérrez, Rebeca; Salazar, Gerardo; Magallón, Susana; Gouda, Eric; Ramírez Morillo, Ivón; Donadío, Sabina; Granados Mendoza, Carolina.Phylogenetic informativeness
Inverted repeats (IR)
Gene translocation
Inversions
Ancestral state reconstruction
Evolutionary rate shifts
PHYLO II016July 27th 12:00 pmThe Australian Angiosperm Tree of Life projectPhylogenomicsPaperAllnutt, Theodore; Barrett, Matthew; Brown, Gillian; Crayn, Darren; Jackson, Chris; Lum, Mabel; McLay, Todd; Murphy, Daniel; Nargar, Katharina; Sauquet, Hervé; Schmidt-Lebuhn, Alexander; Shepherd, Kelly; Simpson, Lalita; Van Dijk, Korjent; Waycott, Michelle.Australia
target-capture
phylogenomics
Angiosperms
Wednesday, July 27th
1:30 pm to 5:45 pm · Tubughnenq' 4/Dena'ina Center
Session PHYLO III: Contributed Papers: Phylogenomics III
PHYLO III001July 27th 1:30 pmAn updated phylogeny, biogeography, and PhyloCode-based classification of Cornaceae based on three sets of genomic dataPhylogenomicsPaperXiang, Qiuyun (Jenny); Du, Zhiyuan; Cheng, Jing; Zhou, Wenbin; Wang, Qing-Feng; Soltis, Douglas; Soltis, Pamela.phylogenomics
RAD-Seq
Angiosperms353 Hyb-Seq
Cornaceae
Classification 
Historical biogeography
PHYLO III002July 27th 1:45 pmPhylogenetic analysis of Perennial Endemic North American (PENA) Clade of ApiaceaePhylogenomicsPaperOdufuwa, Phebian; Smith, James (Jim); Mansfield, Don; Feist, Mary Ann; Darrach, Mark.phylogenetics
species delimitation
Generic boundaries delineation
Angiosperms353
Geophyte
Lomatium
endemic flora
PHYLO III003July 27th 2:00 pmA Hyb-Seq phylogeny of Boechera (Brassicaceae) and related generaPhylogenomicsPaperHay, Nikolai; Bailey, C. Donovan; Mandakova, Terezie; Hendriks, Kasper; Pryer, Kathleen; Windham, Michael.Boechera
Hyb-Seq
phylogenetics
Brassicaceae
PHYLO III004July 27th 2:15 pmA phylogenomic baseline to study the evolution of extreme floral curvature in Centropogon subgenus Centropogon (Campanulaceae)PhylogenomicsPaperMansaray, Janet; Frost, Laura; Bedoya, Ana Maria; Lagomarsino, Laura.
PHYLO III005July 27th 2:30 pmGoldenrod herbariomics: Hybrid-sequence capture reveals the phylogeny of Solidago (Asteraceae)PhylogenomicsPaperBeck, James; McMinn-Sauder, Harper; Stover, Melissa; Lemmon, Alan; Lemmon, Emily; Semple, John.Anchored Hybrid Enrichment
Chrysoma
herbarium specimens
North America
Solidago
phylogenomics
Oligoneuron
polyploidy
PHYLO III006July 27th 2:45 pmIntegrating phylogenomic and cytological evidence for the allopolyploid origin of Drosera anglica (Droseraceae)PhylogenomicsPaperMohn, Rebekah; Yang, Ya.polyploid
transcriptome
WGD
carnivorous plant
Caryophyllales
PHYLO III007July 27th 3:00 pmDissecting pollinator-driven floral-trait evolution in Agave subg. ManfredaPhylogenomicsPaperMacNeill, Bryan; McKain, Michael; Ruiz-Sanchez, Eduardo; Rodriguez Contreras, Aaron.
July 27th 3:15 pmBreakPhylogenomics
PHYLO III009July 27th 3:45 pmA phylogeny of the evening primrose family (Onagraceae) with a focus on tribe Onagreae using a target enrichment approachPhylogenomicsPaperOverson, Rick; Johnson, Matthew; Bechen, Lindsey; Kinosian, Sylvia; Douglas, Norman; Fant, Jeremie B; Hoch, Peter; Levin, Rachel; Moore, Michael; Raguso, Robert; Wagner, Warren; Skogen, Krissa; Wickett, Norman.phylogenomics
HybSeq
Onagraceae
evening primrose
Target Enrichment
systematics
phylogenetics
PHYLO III010July 27th 4:00 pmA phylogenomic study of Scutellaria (Lamiaceae) based on chloroplast genomes and 272 nuclear single-copy genesPhylogenomicsPaperLee, Yoonkyung; Paton, Alan; Olmstead, Richard; Kim, Sangtae.Scutellaria
Lamiaceae
Chlroplast genome
Nuclear genome
phylogenomics
Hyb-Seq
PHYLO III011July 27th 4:15 pmPlastid phylogenomics of the Sansevieria Clade of Dracaena (Asparagaceae) resolves a recent radiationPhylogenomicsPaperLarridon, Isabel; van Kleinwee, Iris; Shah, Toral; Bauters, Kenneth; Asselman, Pieter; Goetghebeur, Paul; Leliaert, Frederik; Veltjen, Emily.biogeography
convergent evolution
dated phylogeny
genome skimming
succulent plants
PHYLO III012July 27th 4:30 pmReference-free and bait-guided phylogenetic inference and species identification in the ginseng genus Panax (Araliaceae) using genome skim dataPhylogenomicsPaperLiterman, Robert; Fairbanks, Regina; Liu, Jing; Liu, Bin-Bin; Nie, Zelong; Ren, Chen; Johnson, Gabriel; Wen, Jun; Zimmer, Elizabeth; Hunter, Elizabeth; Handy, Sara.Panax
ginseng
baits
genome skimming
phylogeny
species identification
PHYLO III013July 27th 4:45 pmResolving the reticulate evolutionary history of the New Zealand polyploid-rich genus Azorella (Apiaceae)PhylogenomicsPaperNing, Weixuan; Meudt, Heidi; Nicolas, Antoine; Plunkett, Gregory; Lee, William; Tate, Jennifer.Azorella
Apiaceae
hybridization
Hyb-Seq
whole-genome duplication
phylogenomics
Reticulation
genome skimming
PHYLO III014July 27th 5:00 pmA First Plastome Phylogeny for Rumex L. (Polygonaceae), with Fossil-Aided Date CalibrationPhylogenomicsPaperKoenemann, Daniel Mark; Kistler, Logan; Burke, Janelle.RAxML
BEAST
Fossil Calibration
Cenozoic
Plastomics
PHYLO III015July 27th 5:15 pmRampant nuclear-mitochondrial-plastid phylogenomic discordance in globally distributed calcifying microalgaePhylogenomicsPaperKao, Tzu-Tong; Wang, Tzu-Haw; Ku, Chuan.coccolithophore
cytonuclear discordance
heteroplasmy
hybridization
inter-organellar discordance
organelle inheritance
marine phytoplankton
protist
PHYLO III016July 27th 5:30 pmIncorporating Phased Alleles to Reconstruct a Recent and Rapid Radiation in Schiedea (Caryophyllaceae)PhylogenomicsPaperLoke, Elena; McDonnell, Angela; Moore, Michael; Sakai, Ann; Skogen, Krissa; Wagner, Warren; Weller, Stephen; Weisenberger, Lauren; Wickett, Norman.Schiedea
Hawaiian Islands
HybSeq
Target Enrichment
Alleles
Incomplete Lineage Sorting
Carophyllaceae
Radiation

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